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  5. Sobic.001G000400.1

Sobic.001G000400.1


Description : subfamily ABCG transporter


Gene families : OG_42_0000055 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000055_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G000400.1
Cluster HCAA Clusters: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
115821 No alias ABC-2 and Plant PDR ABC-type transporter family protein 0.03 Orthogroups_2024-Update
GRMZM2G003411 No alias pleiotropic drug resistance 12 0.03 Orthogroups_2024-Update
MA_10425791g0020 No alias (q8gu88|pdr7_orysa : 1086.0) Putative pleiotropic drug... 0.02 Orthogroups_2024-Update
Potri.010G153800 No alias pleiotropic drug resistance 9 0.07 Orthogroups_2024-Update
Seita.9G283100.1 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
Sobic.002G174000.1 No alias subfamily ABCG transporter 0.04 Orthogroups_2024-Update
Sopen01g044530 No alias ABC-2 type transporter 0.03 Orthogroups_2024-Update
Sopen09g034570 No alias ABC-2 type transporter 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR013581 PDR_assoc 682 745
IPR013525 ABC_2_trans 1127 1340
IPR013525 ABC_2_trans 463 674
IPR029481 ABC_trans_N 54 103
IPR003439 ABC_transporter-like 829 981
IPR003439 ABC_transporter-like 126 308
No external refs found!