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  5. Sobic.001G003200.4

Sobic.001G003200.4


Description : basal Sigma-type transcription factor


Gene families : OG_42_0001174 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001174_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G003200.4
Cluster HCAA Clusters: Cluster_244

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G144196 No alias RNApolymerase sigma-subunit F 0.03 Orthogroups_2024-Update
evm.model.tig00020816.89 No alias (at1g08540 : 224.0) Enodes a subunit of chloroplast RNA... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA 16Dec
BP GO:0006352 DNA-templated transcription, initiation IEA 16Dec
BP GO:0006355 regulation of transcription, DNA-templated IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003873 6-phosphofructo-2-kinase activity IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0005996 monosaccharide metabolic process IEP Predicted GO
BP GO:0006000 fructose metabolic process IEP Predicted GO
MF GO:0008443 phosphofructokinase activity IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0019200 carbohydrate kinase activity IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
InterPro domains Description Start Stop
IPR007627 RNA_pol_sigma70_r2 321 388
IPR007630 RNA_pol_sigma70_r4 491 539
IPR007624 RNA_pol_sigma70_r3 271 314
IPR007624 RNA_pol_sigma70_r3 400 471
No external refs found!