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  5. Sobic.001G016100.1

Sobic.001G016100.1


Description : Unknown function


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G016100.1
Cluster HCAA Clusters: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
105356 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
45004 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
84339 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
A4A49_17130 No alias pentatricopeptide repeat-containing protein dot4, chloroplastic 0.03 Orthogroups_2024-Update
A4A49_29893 No alias pentatricopeptide repeat-containing protein, chloroplastic 0.03 Orthogroups_2024-Update
AC203841.3_FG002 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi1g01970 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g05610 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g47170 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g06450 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
Bradi2g32290 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi3g51740 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi3g55520 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi5g01440 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G031588 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G076257 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G129783 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G158839 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G163396 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G171994 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G331779 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.04G127500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G168800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.14G194400 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.16G206000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
HORVU7Hr1G111860.1 No alias Unknown function 0.01 Orthogroups_2024-Update
LOC_Os05g12130 No alias EMB2261, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os07g07620 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os09g38310 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
MA_16823g0010 No alias (at1g11290 : 694.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
MA_20782g0010 No alias (at5g13230 : 644.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
MA_71104g0010 No alias (at3g12770 : 623.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
PSME_00036148-RA No alias (at2g22070 : 583.0) pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
Potri.001G075800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.003G191000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.007G050200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.013G044700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.018G071800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.2G047600.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.3G227100.1 No alias RNA editing factor *(MEF21) 0.01 Orthogroups_2024-Update
Seita.6G213800.1 No alias RNA editing factor *(DOT4) 0.03 Orthogroups_2024-Update
Seita.7G131800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G015400.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Sobic.006G114300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc04g063270 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update
Sopen02g024180 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen07g003070 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen11g004720 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen11g024580 No alias PPR repeat family 0.02 Orthogroups_2024-Update
evm.model.contig_4456.11 No alias (at5g61990 : 169.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003747 translation release factor activity IEP Predicted GO
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP Predicted GO
CC GO:0005777 peroxisome IEP Predicted GO
BP GO:0006415 translational termination IEP Predicted GO
BP GO:0006553 lysine metabolic process IEP Predicted GO
BP GO:0006801 superoxide metabolic process IEP Predicted GO
MF GO:0008079 translation termination factor activity IEP Predicted GO
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009085 lysine biosynthetic process IEP Predicted GO
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
BP GO:0022411 cellular component disassembly IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
BP GO:0032984 protein-containing complex disassembly IEP Predicted GO
CC GO:0042579 microbody IEP Predicted GO
BP GO:0043624 cellular protein complex disassembly IEP Predicted GO
BP GO:0043648 dicarboxylic acid metabolic process IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
BP GO:0046451 diaminopimelate metabolic process IEP Predicted GO
MF GO:0051920 peroxiredoxin activity IEP Predicted GO
BP GO:0072593 reactive oxygen species metabolic process IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 71 114
IPR002885 Pentatricopeptide_repeat 164 211
IPR002885 Pentatricopeptide_repeat 461 507
IPR002885 Pentatricopeptide_repeat 261 308
IPR002885 Pentatricopeptide_repeat 362 392
IPR002885 Pentatricopeptide_repeat 334 356
IPR002885 Pentatricopeptide_repeat 535 559
IPR002885 Pentatricopeptide_repeat 140 162
IPR002885 Pentatricopeptide_repeat 435 457
No external refs found!