Sobic.001G016500.1

Description : component *(uL22) of large ribosomal-subunit (LSU) proteome

Gene families : OG_42_0001801 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001801_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.001G016500.1
Cluster	HCAA Clusters: Cluster_135

Target	Alias	Description	ECC score	Gene Family Method
96251	No alias	Ribosomal protein L22p/L17e family protein	0.1	Orthogroups_2024-Update
At1g27400	No alias	60S ribosomal protein L17-1...	0.03	Orthogroups_2024-Update
Bradi3g41150	No alias	Ribosomal protein L22p/L17e family protein	0.18	Orthogroups_2024-Update
Bradi4g08667	No alias	Ribosomal protein L22p/L17e family protein	0.07	Orthogroups_2024-Update
Brara.B01721.1	No alias	component *(uL22) of large ribosomal-subunit (LSU) proteome	0.18	Orthogroups_2024-Update
Brara.G00848.1	No alias	component *(uL22) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Brara.G02572.1	No alias	component *(uL22) of large ribosomal-subunit (LSU) proteome	0.19	Orthogroups_2024-Update
Brara.I03016.1	No alias	component *(uL22) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Cre13.g568900	No alias	Ribosomal protein L22p/L17e family protein	0.16	Orthogroups_2024-Update
GRMZM2G148744	No alias	Ribosomal protein L22p/L17e family protein	0.13	Orthogroups_2024-Update
Glyma.05G146800	No alias	Ribosomal protein L22p/L17e family protein	0.12	Orthogroups_2024-Update
Glyma.08G103700	No alias	Ribosomal protein L22p/L17e family protein	0.09	Orthogroups_2024-Update
Glyma.11G249700	No alias	Ribosomal protein L22p/L17e family protein	0.1	Orthogroups_2024-Update
Glyma.18G007500	No alias	Ribosomal protein L22p/L17e family protein	0.08	Orthogroups_2024-Update
HORVU5Hr1G052280.1	No alias	component *(uL22) of large ribosomal-subunit (LSU) proteome	0.1	Orthogroups_2024-Update
HORVU7Hr1G054010.1	No alias	component *(uL22) of large ribosomal-subunit (LSU) proteome	0.11	Orthogroups_2024-Update
Kfl00006_0040	kfl00006_0040_v1.1	(at1g67430 : 219.0) Ribosomal protein L22p/L17e family...	0.05	Orthogroups_2024-Update
LOC_Os08g41810	No alias	ribosomal protein L22, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os09g08430	No alias	ribosomal protein L22, putative, expressed	0.02	Orthogroups_2024-Update
MA_10430182g0010	No alias	(at1g27400 : 272.0) Ribosomal protein L22p/L17e family...	0.06	Orthogroups_2024-Update
PSME_00016621-RA	No alias	(o48557\|rl17_maize : 300.0) 60S ribosomal protein L17 -...	0.06	Orthogroups_2024-Update
Potri.008G175500	No alias	Ribosomal protein L22p/L17e family protein	0.03	Orthogroups_2024-Update
Potri.012G096600	No alias	Ribosomal protein L22p/L17e family protein	0.1	Orthogroups_2024-Update
Pp1s22_76V6	No alias	60s ribosomal protein	0.09	Orthogroups_2024-Update
Pp1s364_56V6	No alias	60s ribosomal protein	0.19	Orthogroups_2024-Update
Pp1s38_376V6	No alias	60s ribosomal protein	0.09	Orthogroups_2024-Update
Pp1s97_74V6	No alias	60s ribosomal protein	0.15	Orthogroups_2024-Update
Pp1s97_78V6	No alias	60s ribosomal protein	0.18	Orthogroups_2024-Update
Seita.5G119300.1	No alias	component *(uL22) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Seita.6G112100.1	No alias	component *(uL22) of large ribosomal-subunit (LSU) proteome	0.09	Orthogroups_2024-Update
Seita.6G222100.1	No alias	component *(uL22) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Seita.7G314300.1	No alias	component *(uL22) of large ribosomal-subunit (LSU) proteome	0.16	Orthogroups_2024-Update
Seita.8G022000.1	No alias	component *(uL22) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Solyc03g111230	No alias	Ribosomal protein (AHRD V3.3 *** Q947H2_PETHY)	0.15	Orthogroups_2024-Update
Solyc06g071870	No alias	Ribosomal protein (AHRD V3.3 *** Q947H2_PETHY)	0.15	Orthogroups_2024-Update
Solyc06g071880	No alias	60S ribosomal protein L17 (AHRD V3.3 *** A0A0D3QSL6_TOBAC)	0.12	Orthogroups_2024-Update
Sopen03g030370	No alias	Ribosomal protein L22p/L17e	0.13	Orthogroups_2024-Update
Sopen06g028150	No alias	Ribosomal protein L22p/L17e	0.14	Orthogroups_2024-Update
Sopen06g028160	No alias	Ribosomal protein L22p/L17e	0.19	Orthogroups_2024-Update
evm.model.contig_2031.15	No alias	(p35267\|rl172_horvu : 178.0) 60S ribosomal protein L17-2...	0.21	Orthogroups_2024-Update
evm.model.tig00001215.8	No alias	(o48557\|rl17_maize : 230.0) 60S ribosomal protein L17 -...	0.14	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000105	histidine biosynthetic process	IEP	Predicted GO
MF	GO:0001882	nucleoside binding	IEP	Predicted GO
MF	GO:0001883	purine nucleoside binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003924	GTPase activity	IEP	Predicted GO
MF	GO:0004576	oligosaccharyl transferase activity	IEP	Predicted GO
MF	GO:0005525	GTP binding	IEP	Predicted GO
CC	GO:0005741	mitochondrial outer membrane	IEP	Predicted GO
CC	GO:0005783	endoplasmic reticulum	IEP	Predicted GO
CC	GO:0005789	endoplasmic reticulum membrane	IEP	Predicted GO
BP	GO:0006486	protein glycosylation	IEP	Predicted GO
BP	GO:0006487	protein N-linked glycosylation	IEP	Predicted GO
BP	GO:0006547	histidine metabolic process	IEP	Predicted GO
BP	GO:0006897	endocytosis	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	Predicted GO
BP	GO:0018196	peptidyl-asparagine modification	IEP	Predicted GO
BP	GO:0018279	protein N-linked glycosylation via asparagine	IEP	Predicted GO
MF	GO:0019001	guanyl nucleotide binding	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
CC	GO:0019867	outer membrane	IEP	Predicted GO
CC	GO:0031966	mitochondrial membrane	IEP	Predicted GO
CC	GO:0031968	organelle outer membrane	IEP	Predicted GO
MF	GO:0032549	ribonucleoside binding	IEP	Predicted GO
MF	GO:0032550	purine ribonucleoside binding	IEP	Predicted GO
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predicted GO
BP	GO:0043413	macromolecule glycosylation	IEP	Predicted GO
BP	GO:0052803	imidazole-containing compound metabolic process	IEP	Predicted GO
BP	GO:0070085	glycosylation	IEP	Predicted GO
CC	GO:0098588	bounding membrane of organelle	IEP	Predicted GO
BP	GO:0098657	import into cell	IEP	Predicted GO
CC	GO:0098805	whole membrane	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001063	Ribosomal_L22	17	152

External Links

No external refs found!

Sobic.001G016500.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation