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  5. Sobic.001G017000.1

Sobic.001G017000.1


Description : component *(uS6c) of small plastid ribosomal-subunit proteome


Gene families : OG_42_0007385 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007385_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G017000.1
Cluster HCAA Clusters: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
58368 No alias Translation elongation factor EF1B/ribosomal protein S6... 0.02 Orthogroups_2024-Update
A4A49_12743 No alias 30s ribosomal protein s6 alpha, chloroplastic 0.08 Orthogroups_2024-Update
Bradi1g02030 No alias Translation elongation factor EF1B/ribosomal protein S6... 0.06 Orthogroups_2024-Update
Brara.I01293.1 No alias component *(uS6c) of small plastid ribosomal-subunit proteome 0.08 Orthogroups_2024-Update
Brara.I01316.1 No alias component *(uS6c) of small plastid ribosomal-subunit proteome 0.04 Orthogroups_2024-Update
Cre12.g520600 No alias Translation elongation factor EF1B/ribosomal protein S6... 0.07 Orthogroups_2024-Update
GRMZM2G118005 No alias Translation elongation factor EF1B/ribosomal protein S6... 0.03 Orthogroups_2024-Update
Glyma.05G218800 No alias Translation elongation factor EF1B/ribosomal protein S6... 0.05 Orthogroups_2024-Update
Glyma.08G024900 No alias Translation elongation factor EF1B/ribosomal protein S6... 0.04 Orthogroups_2024-Update
HORVU5Hr1G120250.1 No alias component *(uS6c) of small plastid ribosomal-subunit proteome 0.06 Orthogroups_2024-Update
Kfl00077_0230 kfl00077_0230_v1.1 (p82403|rr6_spiol : 125.0) 30S ribosomal protein S6... 0.11 Orthogroups_2024-Update
MA_10429326g0010 No alias (at1g64510 : 179.0) Translation elongation factor... 0.03 Orthogroups_2024-Update
Mp4g07210.1 No alias component psRPS6 of small ribosomal subunit proteome 0.03 Orthogroups_2024-Update
Potri.001G088300 No alias Translation elongation factor EF1B/ribosomal protein S6... 0.08 Orthogroups_2024-Update
Pp1s359_29V6 No alias ribosomal protein s6 0.02 Orthogroups_2024-Update
Seita.9G016600.1 No alias component *(uS6c) of small plastid ribosomal-subunit proteome 0.11 Orthogroups_2024-Update
Solyc08g082690 No alias Ribosomal protein S6 (AHRD V3.3 *** A0A103XFW4_CYNCS) 0.04 Orthogroups_2024-Update
Sopen08g030910 No alias Ribosomal protein S6 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
MF GO:0019843 rRNA binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
CC GO:0005886 plasma membrane IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predicted GO
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Predicted GO
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000529 Ribosomal_S6 109 208
No external refs found!