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  5. Sobic.001G021400.1

Sobic.001G021400.1


Description : mRNA-translocation factor *(eEF2))


Gene families : OG_42_0001704 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001704_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G021400.1
Cluster HCAA Clusters: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AC203173.3_FG004 No alias Ribosomal protein S5/Elongation factor G/III/V family protein 0.03 Orthogroups_2024-Update
Bradi3g44160 No alias Ribosomal protein S5/Elongation factor G/III/V family protein 0.07 Orthogroups_2024-Update
Bradi3g44175 No alias Ribosomal protein S5/Elongation factor G/III/V family protein 0.07 Orthogroups_2024-Update
Brara.B03590.1 No alias mRNA-translocation factor *(eEF2)) 0.05 Orthogroups_2024-Update
Brara.D02178.1 No alias mRNA-translocation factor *(eEF2)) 0.12 Orthogroups_2024-Update
Brara.H01897.1 No alias mRNA-translocation factor *(eEF2)) 0.04 Orthogroups_2024-Update
Brara.H01898.1 No alias mRNA-translocation factor *(eEF2)) 0.12 Orthogroups_2024-Update
GRMZM2G095851 No alias Ribosomal protein S5/Elongation factor G/III/V family protein 0.03 Orthogroups_2024-Update
HORVU5Hr1G116710.5 No alias mRNA-translocation factor *(eEF2)) 0.03 Orthogroups_2024-Update
HORVU7Hr1G106150.2 No alias mRNA-translocation factor *(eEF2)) 0.08 Orthogroups_2024-Update
Kfl00080_0090 kfl00080_0090_v1.1 (at1g56070 : 1415.0) encodes a translation elongation... 0.03 Orthogroups_2024-Update
LOC_Os02g32030 No alias elongation factor, putative, expressed 0.03 Orthogroups_2024-Update
MA_10426758g0020 No alias (o23755|ef2_betvu : 816.0) Elongation factor 2 (EF-2) -... 0.03 Orthogroups_2024-Update
Mp2g20190.1 No alias mRNA-translocation factor (eEF2) 0.05 Orthogroups_2024-Update
Mp2g20200.1 No alias mRNA-translocation factor (eEF2) 0.05 Orthogroups_2024-Update
Solyc08g062910 No alias Elongation factor 2 (AHRD V3.3 *** EF2_ARATH) 0.14 Orthogroups_2024-Update
Solyc08g062920 No alias elongation factor 2 0.24 Orthogroups_2024-Update
Sopen08g018430 No alias Elongation factor Tu GTP binding domain 0.08 Orthogroups_2024-Update
Sopen08g018460 No alias Elongation factor Tu GTP binding domain 0.03 Orthogroups_2024-Update
evm.model.contig_2314.1 No alias (o23755|ef2_betvu : 1094.0) Elongation factor 2 (EF-2) -... 0.09 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA 16Dec
MF GO:0005525 GTP binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002098 tRNA wobble uridine modification IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006448 regulation of translational elongation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
BP GO:0017182 peptidyl-diphthamide metabolic process IEP Predicted GO
BP GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine IEP Predicted GO
BP GO:0018202 peptidyl-histidine modification IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0033588 Elongator holoenzyme complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035596 methylthiotransferase activity IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
MF GO:0050497 transferase activity, transferring alkylthio groups IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
MF GO:0090560 2-(3-amino-3-carboxypropyl)histidine synthase activity IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
BP GO:1900247 regulation of cytoplasmic translational elongation IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
BP GO:2000765 regulation of cytoplasmic translation IEP Predicted GO
InterPro domains Description Start Stop
IPR000640 EFG_V-like 724 811
IPR004161 EFTu-like_2 394 467
IPR000795 TF_GTP-bd_dom 18 342
IPR005517 Transl_elong_EFG/EF2_IV 611 722
No external refs found!