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  5. Sobic.001G024700.1

Sobic.001G024700.1


Description : Unknown function


Gene families : OG_42_0000228 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000228_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G024700.1
Cluster HCAA Clusters: Cluster_280

Target Alias Description ECC score Gene Family Method Actions
A4A49_01360 No alias protein plant cadmium resistance 9 0.02 Orthogroups_2024-Update
At3g18460 No alias Protein PLANT CADMIUM RESISTANCE 4... 0.03 Orthogroups_2024-Update
Bradi1g03090 No alias PLANT CADMIUM RESISTANCE 2 0.03 Orthogroups_2024-Update
Bradi2g09980 No alias PLAC8 family protein 0.01 Orthogroups_2024-Update
Bradi3g46930 No alias PLANT CADMIUM RESISTANCE 2 0.02 Orthogroups_2024-Update
HORVU2Hr1G002720.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU5Hr1G115870.1 No alias Unknown function 0.01 Orthogroups_2024-Update
LOC_Os02g36950 No alias uncharacterized Cys-rich domain containing protein,... 0.03 Orthogroups_2024-Update
MA_102043g0010 No alias (at1g14870 : 164.0) PLANT CADMIUM RESISTANCE 2 (PCR2);... 0.02 Orthogroups_2024-Update
Mp1g10640.1 No alias Protein PLANT CADMIUM RESISTANCE 6 OS=Arabidopsis... 0.02 Orthogroups_2024-Update
Seita.1G209500.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.9G423000.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G308100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.006G107900.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
MF GO:0008171 O-methyltransferase activity IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
BP GO:0009606 tropism IEP Predicted GO
MF GO:0009916 alternative oxidase activity IEP Predicted GO
BP GO:0010274 hydrotropism IEP Predicted GO
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0030599 pectinesterase activity IEP Predicted GO
BP GO:0031167 rRNA methylation IEP Predicted GO
BP GO:0042545 cell wall modification IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
MF GO:0052689 carboxylic ester hydrolase activity IEP Predicted GO
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP Predicted GO
BP GO:0070475 rRNA base methylation IEP Predicted GO
BP GO:0071554 cell wall organization or biogenesis IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO
InterPro domains Description Start Stop
IPR006461 PLAC_motif_containing 33 133
No external refs found!