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  5. Sobic.001G026800.1

Sobic.001G026800.1


Description : EC_3.2 glycosylase


Gene families : OG_42_0000259 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000259_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G026800.1
Cluster HCAA Clusters: Cluster_224

Target Alias Description ECC score Gene Family Method Actions
Glyma.17G047800 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Solyc06g009790 No alias Pectin lyase-like superfamily protein (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Solyc08g082170 No alias Pectin lyase-like superfamily protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA 16Dec
BP GO:0005975 carbohydrate metabolic process IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004177 aminopeptidase activity IEP Predicted GO
MF GO:0004181 metallocarboxypeptidase activity IEP Predicted GO
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
MF GO:0008235 metalloexopeptidase activity IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
MF GO:0008238 exopeptidase activity IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
MF GO:0042578 phosphoric ester hydrolase activity IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043248 proteasome assembly IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0060090 molecular adaptor activity IEP Predicted GO
MF GO:0070006 metalloaminopeptidase activity IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
MF GO:0070569 uridylyltransferase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 140 417
No external refs found!