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  5. Sobic.001G028100.1

Sobic.001G028100.1


Description : group-II intron splicing RNA helicase *(RH3)


Gene families : OG_42_0000844 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000844_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G028100.1
Cluster HCAA Clusters: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Bradi1g03180 No alias DEAD box RNA helicase (RH3) 0.06 Orthogroups_2024-Update
Bradi4g02000 No alias putative mitochondrial RNA helicase 1 0.03 Orthogroups_2024-Update
Bradi4g35490 No alias DEAD box RNA helicase (PRH75) 0.03 Orthogroups_2024-Update
Glyma.03G226600 No alias DEAD box RNA helicase (RH3) 0.04 Orthogroups_2024-Update
Glyma.10G140900 No alias DEAD box RNA helicase (RH3) 0.05 Orthogroups_2024-Update
Glyma.10G241900 No alias DEAD box RNA helicase (PRH75) 0.03 Orthogroups_2024-Update
Glyma.20G089600 No alias DEAD box RNA helicase (RH3) 0.06 Orthogroups_2024-Update
PSME_00018109-RA No alias (at5g26742 : 768.0) embryo defective 1138 (emb1138);... 0.04 Orthogroups_2024-Update
Potri.005G000100 No alias DEAD box RNA helicase (RH3) 0.03 Orthogroups_2024-Update
Potri.005G000500 No alias DEAD box RNA helicase (RH3) 0.05 Orthogroups_2024-Update
Pp1s54_79V6 No alias nucleolar rna helicase 2 0.02 Orthogroups_2024-Update
Pp1s7_15V6 No alias dead deah box helicase family expressed 0.02 Orthogroups_2024-Update
Seita.9G027200.1 No alias group-II intron splicing RNA helicase *(RH3) 0.06 Orthogroups_2024-Update
Solyc08g042050 No alias RNA helicase DEAD25 0.05 Orthogroups_2024-Update
Sopen07g023350 No alias DEAD/DEAH box helicase 0.04 Orthogroups_2024-Update
Sopen08g012480 No alias DEAD/DEAH box helicase 0.05 Orthogroups_2024-Update
Sopen12g002280 No alias DEAD/DEAH box helicase 0.02 Orthogroups_2024-Update
evm.model.tig00000093.151 No alias (at5g26742 : 291.0) embryo defective 1138 (emb1138);... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0003723 RNA binding IEA 16Dec
MF GO:0004386 helicase activity IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0004832 valine-tRNA ligase activity IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006353 DNA-templated transcription, termination IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006438 valyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006465 signal peptide processing IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Predicted GO
MF GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEP Predicted GO
MF GO:0015020 glucuronosyltransferase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035596 methylthiotransferase activity IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0050497 transferase activity, transferring alkylthio groups IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR012562 GUCT 522 622
IPR011545 DEAD/DEAH_box_helicase_dom 118 290
IPR001650 Helicase_C 327 435
IPR001878 Znf_CCHC 751 767
No external refs found!