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  5. Sobic.001G031300.1

Sobic.001G031300.1


Description : cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2)


Gene families : OG_42_0006924 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006924_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G031300.1
Cluster HCAA Clusters: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
At1g74850 No alias PTAC2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNJ2] 0.03 Orthogroups_2024-Update
Bradi1g03450 No alias plastid transcriptionally active 2 0.04 Orthogroups_2024-Update
GRMZM2G122116 No alias plastid transcriptionally active 2 0.03 Orthogroups_2024-Update
HORVU5Hr1G114630.1 No alias cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2) 0.03 Orthogroups_2024-Update
Kfl00005_0390 kfl00005_0390_v1.1 (at1g74850 : 553.0) Present in transcriptionally active... 0.01 Orthogroups_2024-Update
Seita.9G030000.1 No alias cofactor of plastid-encoded RNA polymerase *(PAP2/TAC2) 0.04 Orthogroups_2024-Update
Solyc03g113630 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
MF GO:0008987 quinolinate synthetase A activity IEP Predicted GO
BP GO:0009314 response to radiation IEP Predicted GO
BP GO:0009416 response to light stimulus IEP Predicted GO
BP GO:0009435 NAD biosynthetic process IEP Predicted GO
BP GO:0009452 7-methylguanosine RNA capping IEP Predicted GO
BP GO:0009581 detection of external stimulus IEP Predicted GO
BP GO:0009582 detection of abiotic stimulus IEP Predicted GO
BP GO:0009583 detection of light stimulus IEP Predicted GO
BP GO:0009584 detection of visible light IEP Predicted GO
BP GO:0009605 response to external stimulus IEP Predicted GO
BP GO:0009628 response to abiotic stimulus IEP Predicted GO
MF GO:0016730 oxidoreductase activity, acting on iron-sulfur proteins as donors IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
MF GO:0016881 acid-amino acid ligase activity IEP Predicted GO
BP GO:0019674 NAD metabolic process IEP Predicted GO
BP GO:0036260 RNA capping IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
BP GO:0051606 detection of stimulus IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 557 585
IPR002885 Pentatricopeptide_repeat 627 654
IPR002885 Pentatricopeptide_repeat 521 546
IPR033443 PPR_long 208 386
IPR002885 Pentatricopeptide_repeat 412 459
No external refs found!