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  5. Sobic.001G045400.1

Sobic.001G045400.1


Description : polygalacturonase *(QRT2) & EC_3.2 glycosylase


Gene families : OG_42_0000306 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000306_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G045400.1
Cluster HCAA Clusters: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
Bradi1g04641 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G004500 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.15G275400 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.U005701 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
MA_96282g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00023336-RA No alias (at1g80170 : 252.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00025694-RA No alias (at1g80170 : 422.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
Sopen03g035390 No alias Glycosyl hydrolases family 28 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA 16Dec
BP GO:0005975 carbohydrate metabolic process IEA 16Dec
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 100 431
No external refs found!