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  5. Sobic.001G046900.1

Sobic.001G046900.1


Description : component *(PsaD) of PS-I complex


Gene families : OG_42_0006268 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006268_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G046900.1
Cluster HCAA Clusters: Cluster_225

Target Alias Description ECC score Gene Family Method Actions
A4A49_07455 No alias photosystem i reaction center subunit ii, chloroplastic 0.09 Orthogroups_2024-Update
A4A49_20575 No alias photosystem i reaction center subunit ii, chloroplastic 0.05 Orthogroups_2024-Update
At1g03130 No alias Photosystem I reaction center subunit II-2,... 0.09 Orthogroups_2024-Update
At4g02770 No alias Photosystem I reaction center subunit II-1,... 0.06 Orthogroups_2024-Update
Bradi1g04700 No alias photosystem I subunit D-2 0.11 Orthogroups_2024-Update
Brara.I00185.1 No alias component *(PsaD) of PS-I complex 0.11 Orthogroups_2024-Update
Cre05.g238332 No alias photosystem I subunit D-2 0.09 Orthogroups_2024-Update
GRMZM2G024150 No alias photosystem I subunit D-2 0.07 Orthogroups_2024-Update
Glyma.10G249000 No alias photosystem I subunit D-2 0.11 Orthogroups_2024-Update
Glyma.20G144700 No alias photosystem I subunit D-2 0.1 Orthogroups_2024-Update
HORVU5Hr1G109710.1 No alias component *(PsaD) of PS-I complex 0.11 Orthogroups_2024-Update
Kfl00193_0150 kfl00193_0150_v1.1 (p12353|psad_spiol : 246.0) Photosystem I reaction... 0.07 Orthogroups_2024-Update
MA_9169733g0010 No alias (p32869|psad_cucsa : 194.0) Photosystem I reaction... 0.06 Orthogroups_2024-Update
Mp5g04200.1 No alias component PsaD of PS-I complex 0.08 Orthogroups_2024-Update
Pp1s1_788V6 No alias psi reaction center subunit ii 0.1 Orthogroups_2024-Update
Pp1s4_321V6 No alias psi reaction center subunit ii 0.15 Orthogroups_2024-Update
Pp1s77_69V6 No alias psi reaction center subunit ii 0.12 Orthogroups_2024-Update
Seita.9G045100.1 No alias component *(PsaD) of PS-I complex 0.12 Orthogroups_2024-Update
Solyc06g054260 No alias photosystem 1 reaction center protein subunit 2 0.1 Orthogroups_2024-Update
Sopen06g019380 No alias PsaD 0.12 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0009522 photosystem I IEA 16Dec
CC GO:0009538 photosystem I reaction center IEA 16Dec
BP GO:0015979 photosynthesis IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
BP GO:0010206 photosystem II repair IEP Predicted GO
BP GO:0010207 photosystem II assembly IEP Predicted GO
MF GO:0016851 magnesium chelatase activity IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
BP GO:0030091 protein repair IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP Predicted GO
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
MF GO:1901567 fatty acid derivative binding IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR003685 PsaD 68 199
No external refs found!