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  5. Sobic.001G051500.1

Sobic.001G051500.1


Description : regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis pathway


Gene families : OG_42_0000879 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000879_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G051500.1
Cluster HCAA Clusters: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
At2g40700 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
At3g18600 No alias DEAD-box ATP-dependent RNA helicase 51... 0.1 Orthogroups_2024-Update
At5g54910 No alias DEAD-box ATP-dependent RNA helicase 32... 0.08 Orthogroups_2024-Update
At5g65900 No alias DEAD-box ATP-dependent RNA helicase 27... 0.03 Orthogroups_2024-Update
Bradi4g41160 No alias P-loop containing nucleoside triphosphate hydrolases... 0.08 Orthogroups_2024-Update
Brara.A02921.1 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis pathway 0.03 Orthogroups_2024-Update
Brara.C03695.1 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis pathway 0.06 Orthogroups_2024-Update
Brara.E02336.1 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis pathway 0.12 Orthogroups_2024-Update
Brara.F02458.1 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis pathway 0.08 Orthogroups_2024-Update
Brara.J00951.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Cre03.g156150 No alias DEA(D/H)-box RNA helicase family protein 0.09 Orthogroups_2024-Update
Cre07.g314900 No alias P-loop containing nucleoside triphosphate hydrolases... 0.1 Orthogroups_2024-Update
GRMZM5G897976 No alias P-loop containing nucleoside triphosphate hydrolases... 0.06 Orthogroups_2024-Update
Glyma.04G145400 No alias P-loop containing nucleoside triphosphate hydrolases... 0.07 Orthogroups_2024-Update
Glyma.06G209400 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
Glyma.15G181200 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
HORVU1Hr1G004510.5 No alias Unknown function 0.05 Orthogroups_2024-Update
Kfl00121_0050 kfl00121_0050_v1.1 (at5g54910 : 607.0) DEA(D/H)-box RNA helicase family... 0.02 Orthogroups_2024-Update
Kfl00630_0030 kfl00630_0030_v1.... (at3g18600 : 568.0) P-loop containing nucleoside... 0.06 Orthogroups_2024-Update
Mp6g05260.1 No alias DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... 0.02 Orthogroups_2024-Update
Mp8g10290.1 No alias DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis... 0.02 Orthogroups_2024-Update
PSME_00017078-RA No alias (at5g54910 : 653.0) DEA(D/H)-box RNA helicase family... 0.03 Orthogroups_2024-Update
Potri.001G250700 No alias P-loop containing nucleoside triphosphate hydrolases... 0.14 Orthogroups_2024-Update
Potri.001G423300 No alias DEA(D/H)-box RNA helicase family protein 0.06 Orthogroups_2024-Update
Potri.009G045300 No alias P-loop containing nucleoside triphosphate hydrolases... 0.12 Orthogroups_2024-Update
Pp1s59_317V6 No alias rna helicase 0.03 Orthogroups_2024-Update
Seita.2G332500.1 No alias Unknown function 0.15 Orthogroups_2024-Update
Solyc03g114370 No alias RNA helicase DEAD13 0.13 Orthogroups_2024-Update
Solyc07g064520 No alias RNA helicase DEAD24 0.11 Orthogroups_2024-Update
Sopen03g033470 No alias DEAD/DEAH box helicase 0.1 Orthogroups_2024-Update
Sopen07g021900 No alias DEAD/DEAH box helicase 0.02 Orthogroups_2024-Update
evm.model.contig_3451.10 No alias (at3g18600 : 515.0) P-loop containing nucleoside... 0.02 Orthogroups_2024-Update
evm.model.tig00000441.11 No alias (at3g18600 : 300.0) P-loop containing nucleoside... 0.05 Orthogroups_2024-Update
evm.model.tig00000441.12 No alias (at5g65900 : 171.0) DEA(D/H)-box RNA helicase family... 0.04 Orthogroups_2024-Update
evm.model.tig00000615.43 No alias (at2g40700 : 189.0) P-loop containing nucleoside... 0.02 Orthogroups_2024-Update
evm.model.tig00020604.24 No alias (at5g54910 : 437.0) DEA(D/H)-box RNA helicase family... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 151 321
IPR001650 Helicase_C 367 473
IPR025313 DUF4217 516 575
No external refs found!