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  5. Sobic.001G053700.2

Sobic.001G053700.2


Description : Unknown function


Gene families : OG_42_0000134 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000134_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G053700.2

Target Alias Description ECC score Gene Family Method Actions
A4A49_34628 No alias protein argonaute 1 0.01 Orthogroups_2024-Update
A4A49_39268 No alias protein argonaute 10 0.02 Orthogroups_2024-Update
At5g43810 No alias Protein argonaute 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9XGW1] 0.01 Orthogroups_2024-Update
Bradi3g60697 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.01 Orthogroups_2024-Update
Brara.B00933.1 No alias siRNA-integrating factor *(AGO) 0.04 Orthogroups_2024-Update
Brara.E01555.1 No alias siRNA-binding factor *(AGO2) of non-canonical RdDM pathway 0.02 Orthogroups_2024-Update
Brara.J01515.1 No alias siRNA-integrating factor *(AGO) 0.02 Orthogroups_2024-Update
Brara.J01517.1 No alias siRNA-integrating factor *(AGO) 0.01 Orthogroups_2024-Update
GRMZM2G059033 No alias Argonaute family protein 0.06 Orthogroups_2024-Update
GRMZM2G123063 No alias Argonaute family protein 0.01 Orthogroups_2024-Update
GRMZM2G450474 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.03 Orthogroups_2024-Update
Glyma.01G053100 No alias Argonaute family protein 0.02 Orthogroups_2024-Update
HORVU0Hr1G012490.26 No alias siRNA-integrating factor *(AGO) 0.02 Orthogroups_2024-Update
HORVU2Hr1G045050.1 No alias Unknown function 0.01 Orthogroups_2024-Update
HORVU3Hr1G038830.1 No alias siRNA-integrating factor *(AGO) 0.02 Orthogroups_2024-Update
LOC_Os02g07310 No alias argonaute, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g06770 No alias argonaute, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g47870 No alias PINHEAD, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g39640 No alias PINHEAD, putative, expressed 0.01 Orthogroups_2024-Update
MA_118377g0010 No alias (at1g48410 : 1469.0) Encodes an RNA Slicer that... 0.02 Orthogroups_2024-Update
PSME_00001016-RA No alias (at5g43810 : 1422.0) Encodes a member of the EIF2C... 0.01 Orthogroups_2024-Update
PSME_00014451-RA No alias (at1g69440 : 623.0) Encodes ARGONAUTE7, a member of the... 0.01 Orthogroups_2024-Update
PSME_00043545-RA No alias (at1g69440 : 303.0) Encodes ARGONAUTE7, a member of the... 0.01 Orthogroups_2024-Update
Potri.006G118600 No alias Argonaute family protein 0.02 Orthogroups_2024-Update
Seita.7G236800.1 No alias siRNA-binding factor *(AGO2) of non-canonical RdDM pathway 0.02 Orthogroups_2024-Update
Sobic.001G136150.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.003G129500.3 No alias siRNA-integrating factor *(AGO) 0.01 Orthogroups_2024-Update
Sobic.006G215000.1 No alias siRNA-binding factor *(AGO2) of non-canonical RdDM pathway 0.02 Orthogroups_2024-Update
Sopen02g018440 No alias Piwi domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
InterPro domains Description Start Stop
IPR032473 Argonaute_Mid_dom 391 468
IPR014811 ArgoL1 143 192
IPR032472 ArgoL2 334 380
IPR032474 Argonaute_N 2 132
IPR003165 Piwi 486 806
IPR003100 PAZ_dom 216 325
No external refs found!