Description : linker histone *(H1)
Gene families : OG_42_0000689 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000689_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Sorghum bicolor: Sobic.001G054800.2 | |
Cluster | HCAA Clusters: Cluster_17 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
PSME_00018261-RA | No alias | no hits & (original description: no original description) | 0.01 | Orthogroups_2024-Update | |
Solyc02g084240 | No alias | H1 histone-like protein | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000786 | nucleosome | IEA | 16Dec |
MF | GO:0003677 | DNA binding | IEA | 16Dec |
BP | GO:0006334 | nucleosome assembly | IEA | 16Dec |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000075 | cell cycle checkpoint | IEP | Predicted GO |
BP | GO:0000077 | DNA damage checkpoint | IEP | Predicted GO |
BP | GO:0000725 | recombinational repair | IEP | Predicted GO |
BP | GO:0000726 | non-recombinational repair | IEP | Predicted GO |
MF | GO:0003678 | DNA helicase activity | IEP | Predicted GO |
MF | GO:0003697 | single-stranded DNA binding | IEP | Predicted GO |
MF | GO:0003916 | DNA topoisomerase activity | IEP | Predicted GO |
MF | GO:0004017 | adenylate kinase activity | IEP | Predicted GO |
MF | GO:0004176 | ATP-dependent peptidase activity | IEP | Predicted GO |
CC | GO:0005694 | chromosome | IEP | Predicted GO |
CC | GO:0005741 | mitochondrial outer membrane | IEP | Predicted GO |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006259 | DNA metabolic process | IEP | Predicted GO |
BP | GO:0006265 | DNA topological change | IEP | Predicted GO |
BP | GO:0006281 | DNA repair | IEP | Predicted GO |
BP | GO:0006302 | double-strand break repair | IEP | Predicted GO |
BP | GO:0006303 | double-strand break repair via nonhomologous end joining | IEP | Predicted GO |
BP | GO:0006310 | DNA recombination | IEP | Predicted GO |
BP | GO:0006400 | tRNA modification | IEP | Predicted GO |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
BP | GO:0006950 | response to stress | IEP | Predicted GO |
BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | Predicted GO |
MF | GO:0008097 | 5S rRNA binding | IEP | Predicted GO |
MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
BP | GO:0009262 | deoxyribonucleotide metabolic process | IEP | Predicted GO |
BP | GO:0009263 | deoxyribonucleotide biosynthetic process | IEP | Predicted GO |
MF | GO:0016763 | transferase activity, transferring pentosyl groups | IEP | Predicted GO |
MF | GO:0016776 | phosphotransferase activity, phosphate group as acceptor | IEP | Predicted GO |
MF | GO:0019205 | nucleobase-containing compound kinase activity | IEP | Predicted GO |
CC | GO:0030014 | CCR4-NOT complex | IEP | Predicted GO |
CC | GO:0030127 | COPII vesicle coat | IEP | Predicted GO |
BP | GO:0031570 | DNA integrity checkpoint | IEP | Predicted GO |
MF | GO:0031625 | ubiquitin protein ligase binding | IEP | Predicted GO |
CC | GO:0031968 | organelle outer membrane | IEP | Predicted GO |
BP | GO:0033554 | cellular response to stress | IEP | Predicted GO |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
MF | GO:0044389 | ubiquitin-like protein ligase binding | IEP | Predicted GO |
BP | GO:0045786 | negative regulation of cell cycle | IEP | Predicted GO |
BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
MF | GO:0050145 | nucleoside monophosphate kinase activity | IEP | Predicted GO |
BP | GO:0050896 | response to stimulus | IEP | Predicted GO |
BP | GO:0051716 | cellular response to stimulus | IEP | Predicted GO |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
CC | GO:0098805 | whole membrane | IEP | Predicted GO |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Predicted GO |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR005818 | Histone_H1/H5_H15 | 50 | 116 |
No external refs found! |