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  5. Sobic.001G063900.1

Sobic.001G063900.1


Description : RING-H2-class ATL-subclass E3 ubiquitin ligase


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G063900.1
Cluster HCAA Clusters: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
A4A49_18116 No alias ring-h2 finger protein atl78 0.02 Orthogroups_2024-Update
A4A49_22293 No alias ring-h2 finger protein atl13 0.04 Orthogroups_2024-Update
At2g47560 No alias RING-H2 finger protein ATL64... 0.03 Orthogroups_2024-Update
Bradi3g52160 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Bradi5g18837 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Brara.D02177.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
GRMZM2G386584 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.03G017500 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.04G098100 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.07G046400 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.14G058000 No alias RING/U-box superfamily protein 0.05 Orthogroups_2024-Update
Glyma.15G056000 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G077490.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Kfl00034_0310 kfl00034_0310_v1.1 no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
Kfl00066_0030 kfl00066_0030_v1.1 (at1g23980 : 83.2) RING/U-box superfamily protein;... 0.04 Orthogroups_2024-Update
LOC_Os02g35329 No alias RING-H2 finger protein ATL3F, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g34230 No alias RING-H2 finger protein, putative, expressed 0.05 Orthogroups_2024-Update
LOC_Os11g47700 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
MA_10429624g0010 No alias (at3g05200 : 133.0) Encodes a putative RING-H2 zinc... 0.06 Orthogroups_2024-Update
Pp1s213_71V6 No alias zinc finger 0.02 Orthogroups_2024-Update
Pp1s71_157V6 No alias ac009177_16 ring-h2 zinc finger protein atl6 0.03 Orthogroups_2024-Update
Seita.4G172200.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Seita.5G148800.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
Seita.5G322600.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Seita.7G218600.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Sobic.004G187600.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Solyc06g007230 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT2G42360.1) 0.04 Orthogroups_2024-Update
Sopen02g016820 No alias Ring finger domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 129 171
No external refs found!