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  5. Sobic.001G072900.2

Sobic.001G072900.2


Description : Unknown function


Gene families : OG_42_0009240 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009240_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G072900.2
Cluster HCAA Clusters: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
Brara.I04605.1 No alias Unknown function 0.04 Orthogroups_2024-Update
GRMZM2G471348 No alias pentatricopeptide (PPR) repeat-containing protein 0.05 Orthogroups_2024-Update
Seita.9G072300.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Solyc04g054290 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000725 recombinational repair IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004017 adenylate kinase activity IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0016151 nickel cation binding IEP Predicted GO
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Predicted GO
MF GO:0019205 nucleobase-containing compound kinase activity IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
MF GO:0050145 nucleoside monophosphate kinase activity IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 465 489
IPR002885 Pentatricopeptide_repeat 364 386
IPR002885 Pentatricopeptide_repeat 229 251
IPR002885 Pentatricopeptide_repeat 24 54
IPR002885 Pentatricopeptide_repeat 97 122
IPR002885 Pentatricopeptide_repeat 257 286
IPR002885 Pentatricopeptide_repeat 288 336
IPR002885 Pentatricopeptide_repeat 391 437
IPR002885 Pentatricopeptide_repeat 154 203
IPR032867 DYW_dom 606 698
No external refs found!