1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.001G078700.1

Sobic.001G078700.1


Description : transcription factor *(DOF)


Gene families : OG_42_0000027 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000027_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G078700.1
Cluster HCAA Clusters: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
A4A49_04752 No alias dof zinc finger protein dof3.5 0.02 Orthogroups_2024-Update
A4A49_35213 No alias dof zinc finger protein dof1.7 0.03 Orthogroups_2024-Update
A4A49_41416 No alias dof zinc finger protein dof1.4 0.02 Orthogroups_2024-Update
At1g26790 No alias Dof-type zinc finger DNA-binding family protein... 0.04 Orthogroups_2024-Update
At2g34140 No alias Cyclic dof factor 4 [Source:UniProtKB/Swiss-Prot;Acc:O22967] 0.04 Orthogroups_2024-Update
At4g00940 No alias Dof zinc finger protein DOF4.1... 0.06 Orthogroups_2024-Update
At4g38000 No alias DOF4.7 [Source:UniProtKB/TrEMBL;Acc:A0A178V5K8] 0.03 Orthogroups_2024-Update
At5g39660 No alias Cyclic dof factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZL5] 0.04 Orthogroups_2024-Update
Bradi1g26570 No alias TARGET OF MONOPTEROS 6 0.03 Orthogroups_2024-Update
Bradi4g04260 No alias OBF-binding protein 3 0.05 Orthogroups_2024-Update
Brara.B00052.1 No alias transcription factor *(DOF) 0.06 Orthogroups_2024-Update
Brara.F01530.1 No alias transcription factor *(DOF) 0.02 Orthogroups_2024-Update
Brara.F01753.1 No alias transcription factor *(DOF) 0.02 Orthogroups_2024-Update
GRMZM2G064655 No alias TARGET OF MONOPTEROS 6 0.03 Orthogroups_2024-Update
GRMZM2G123900 No alias Dof-type zinc finger DNA-binding family protein 0.04 Orthogroups_2024-Update
GRMZM5G880268 No alias OBF-binding protein 3 0.04 Orthogroups_2024-Update
Glyma.08G358100 No alias DNA binding with one finger 2.4 0.03 Orthogroups_2024-Update
Glyma.09G201000 No alias Dof-type zinc finger DNA-binding family protein 0.04 Orthogroups_2024-Update
Glyma.13G335200 No alias OBF-binding protein 3 0.05 Orthogroups_2024-Update
Glyma.15G215500 No alias cycling DOF factor 1 0.06 Orthogroups_2024-Update
Glyma.16G022900 No alias Dof-type zinc finger DNA-binding family protein 0.04 Orthogroups_2024-Update
HORVU5Hr1G021290.1 No alias transcription factor *(DOF) 0.03 Orthogroups_2024-Update
LOC_Os08g38220 No alias dof zinc finger domain containing protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_18267g0010 No alias (at5g62940 : 141.0) HCA2 induces the formation of... 0.04 Orthogroups_2024-Update
PSME_00028077-RA No alias (at5g39660 : 211.0) Dof-type zinc finger... 0.03 Orthogroups_2024-Update
PSME_00041316-RA No alias (at5g39660 : 139.0) Dof-type zinc finger... 0.02 Orthogroups_2024-Update
Pp1s170_42V6 No alias f-box family protein 0.02 Orthogroups_2024-Update
Pp1s26_282V6 No alias zinc finger 0.03 Orthogroups_2024-Update
Seita.1G290700.1 No alias transcription factor *(DOF) 0.04 Orthogroups_2024-Update
Seita.9G206300.1 No alias transcription factor *(DOF) 0.04 Orthogroups_2024-Update
Seita.9G259300.1 No alias transcription factor *(DOF) 0.05 Orthogroups_2024-Update
Sobic.001G489900.1 No alias transcription factor *(DOF) 0.03 Orthogroups_2024-Update
Sobic.007G223200.2 No alias transcription factor *(DOF) 0.06 Orthogroups_2024-Update
Solyc01g096120 No alias Dof zinc finger protein1 0.03 Orthogroups_2024-Update
Solyc02g090310 No alias Dof zinc finger protein (AHRD V3.3 *-* W9QGW0_9ROSA) 0.05 Orthogroups_2024-Update
Solyc06g005130 No alias Dof zinc finger protein (AHRD V3.3 *** W9RMR9_9ROSA) 0.07 Orthogroups_2024-Update
Solyc10g086440 No alias Dof zinc finger protein (AHRD V3.3 *** W9S882_9ROSA) 0.04 Orthogroups_2024-Update
Sopen02g015430 No alias Dof domain, zinc finger 0.03 Orthogroups_2024-Update
Sopen04g026890 No alias Dof domain, zinc finger 0.04 Orthogroups_2024-Update
Sopen08g004350 No alias Dof domain, zinc finger 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
BP GO:0006355 regulation of transcription, DNA-templated IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR003851 Znf_Dof 81 134
No external refs found!