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  5. Sobic.001G078900.1

Sobic.001G078900.1


Description : GARP subgroup HHO transcription factor


Gene families : OG_42_0002261 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002261_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G078900.1
Cluster HCAA Clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
Bradi1g07630 No alias myb-like transcription factor family protein 0.04 Orthogroups_2024-Update
Bradi1g58830 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.17G178500 No alias Homeodomain-like superfamily protein 0.06 Orthogroups_2024-Update
HORVU5Hr1G097560.5 No alias GARP subgroup HHO transcription factor 0.03 Orthogroups_2024-Update
Sopen02g035100 No alias Myb-like DNA-binding domain 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
BP GO:0006536 glutamate metabolic process IEP Predicted GO
BP GO:0006537 glutamate biosynthetic process IEP Predicted GO
BP GO:0008612 peptidyl-lysine modification to peptidyl-hypusine IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
MF GO:0015930 glutamate synthase activity IEP Predicted GO
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
BP GO:0018193 peptidyl-amino acid modification IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
BP GO:0043648 dicarboxylic acid metabolic process IEP Predicted GO
BP GO:0043650 dicarboxylic acid biosynthetic process IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1901605 alpha-amino acid metabolic process IEP Predicted GO
BP GO:1901607 alpha-amino acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001005 SANT/Myb 216 267
No external refs found!