Sobic.001G079500.1


Description : C2H2-type subclass ZAT transcription factor


Gene families : OG_42_0000046 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000046_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G079500.1
Cluster HCAA Clusters: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
A4A49_01661 No alias zinc finger protein zat10 0.04 Orthogroups_2024-Update
A4A49_10804 No alias zinc finger protein zat11 0.04 Orthogroups_2024-Update
A4A49_12201 No alias zinc finger protein zat5 0.02 Orthogroups_2024-Update
A4A49_29565 No alias zinc finger protein zat5 0.03 Orthogroups_2024-Update
A4A49_40512 No alias zinc finger protein zat10 0.04 Orthogroups_2024-Update
A4A49_41461 No alias zinc finger protein zat10 0.07 Orthogroups_2024-Update
At1g27730 No alias Zinc finger protein ZAT10... 0.05 Orthogroups_2024-Update
At2g26940 No alias C2H2-type zinc finger family protein... 0.03 Orthogroups_2024-Update
Bradi1g14750 No alias salt tolerance zinc finger 0.03 Orthogroups_2024-Update
Brara.B01066.1 No alias C2H2-type subclass ZAT transcription factor 0.05 Orthogroups_2024-Update
Brara.B03976.1 No alias C2H2-type subclass ZAT transcription factor 0.02 Orthogroups_2024-Update
Brara.C00112.1 No alias C2H2-type subclass ZAT transcription factor 0.04 Orthogroups_2024-Update
Brara.C01069.1 No alias C2H2-type subclass ZAT transcription factor 0.02 Orthogroups_2024-Update
Brara.C04299.1 No alias C2H2-type subclass ZAT transcription factor 0.02 Orthogroups_2024-Update
Brara.E00765.1 No alias C2H2-type subclass ZAT transcription factor 0.03 Orthogroups_2024-Update
Brara.E03015.1 No alias C2H2-type subclass ZAT transcription factor 0.02 Orthogroups_2024-Update
Brara.F02478.1 No alias C2H2-type subclass ZAT transcription factor 0.03 Orthogroups_2024-Update row-normalized
Brara.G01602.1 No alias C2H2-type subclass ZAT transcription factor 0.03 Orthogroups_2024-Update
Brara.H02034.1 No alias C2H2-type subclass ZAT transcription factor 0.03 Orthogroups_2024-Update
Brara.I03003.1 No alias C2H2-type subclass ZAT transcription factor 0.03 Orthogroups_2024-Update
Brara.J01055.1 No alias C2H2-type subclass ZAT transcription factor 0.05 Orthogroups_2024-Update
Brara.J01350.1 No alias C2H2-type subclass ZAT transcription factor 0.04 Orthogroups_2024-Update
GRMZM2G002805 No alias C2H2-type zinc finger family protein 0.04 Orthogroups_2024-Update
GRMZM2G035103 No alias salt tolerance zinc finger 0.07 Orthogroups_2024-Update
GRMZM2G112251 No alias C2H2 and C2HC zinc fingers superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G113860 No alias zinc-finger protein 2 0.09 Orthogroups_2024-Update
GRMZM2G361210 No alias C2H2-type zinc finger family protein 0.12 Orthogroups_2024-Update
Glyma.10G045400 No alias C2H2-type zinc finger family protein 0.03 Orthogroups_2024-Update
Glyma.10G059700 No alias C2H2-type zinc finger family protein 0.03 Orthogroups_2024-Update
Glyma.11G142500 No alias C2H2-type zinc finger family protein 0.03 Orthogroups_2024-Update
Glyma.18G287200 No alias C2H2 and C2HC zinc fingers superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G174000 No alias C2H2 and C2HC zinc fingers superfamily protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G086790.2 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU5Hr1G045780.1 No alias C2H2-type subclass ZAT transcription factor 0.02 Orthogroups_2024-Update
HORVU5Hr1G112930.1 No alias C2H2-type subclass ZAT transcription factor 0.03 Orthogroups_2024-Update
HORVU5Hr1G113130.1 No alias C2H2-type subclass ZAT transcription factor 0.02 Orthogroups_2024-Update
LOC_Os03g60570 No alias ZOS3-22 - C2H2 zinc finger protein, expressed 0.04 Orthogroups_2024-Update
LOC_Os04g33540 No alias expressed protein 0.03 Orthogroups_2024-Update
LOC_Os12g39400 No alias ZOS12-09 - C2H2 zinc finger protein, expressed 0.04 Orthogroups_2024-Update
MA_109421g0010 No alias no hits & (original description: no original description) 0.06 Orthogroups_2024-Update
MA_19127g0010 No alias (at1g02040 : 100.0) C2H2-type zinc finger family... 0.06 Orthogroups_2024-Update
MA_23050g0010 No alias (at2g45120 : 95.1) C2H2-like zinc finger protein;... 0.03 Orthogroups_2024-Update
MA_70076g0010 No alias (at1g02040 : 115.0) C2H2-type zinc finger family... 0.02 Orthogroups_2024-Update
MA_85675g0010 No alias (at1g02040 : 116.0) C2H2-type zinc finger family... 0.03 Orthogroups_2024-Update
MA_858691g0010 No alias (at1g02040 : 88.2) C2H2-type zinc finger family protein;... 0.03 Orthogroups_2024-Update
MA_9316262g0010 No alias (at2g45120 : 86.3) C2H2-like zinc finger protein;... 0.05 Orthogroups_2024-Update
PSME_00015139-RA No alias no hits & (original description: no original description) 0.08 Orthogroups_2024-Update
PSME_00056858-RA No alias (at5g56200 : 86.7) C2H2 type zinc finger transcription... 0.03 Orthogroups_2024-Update
Potri.001G224600 No alias C2H2 type zinc finger transcription factor family 0.03 Orthogroups_2024-Update
Potri.001G235800 No alias C2H2 and C2HC zinc fingers superfamily protein 0.03 Orthogroups_2024-Update
Potri.002G119300 No alias salt tolerance zinc finger 0.04 Orthogroups_2024-Update
Potri.002G143600 No alias C2H2-type zinc finger family protein 0.04 Orthogroups_2024-Update
Potri.004G118100 No alias C2H2-like zinc finger protein 0.03 Orthogroups_2024-Update
Potri.009G089400 No alias salt tolerance zinc finger 0.03 Orthogroups_2024-Update
Potri.010G229400 No alias C2H2-type zinc finger family protein 0.03 Orthogroups_2024-Update
Potri.014G017300 No alias salt tolerance zinc finger 0.07 Orthogroups_2024-Update
Seita.1G261200.1 No alias C2H2-type subclass ZAT transcription factor & C2H2-type... 0.04 Orthogroups_2024-Update
Seita.8G248000.1 No alias C2H2-type subclass ZAT transcription factor 0.07 Orthogroups_2024-Update
Seita.9G357400.1 No alias C2H2-type subclass ZAT transcription factor 0.07 Orthogroups_2024-Update
Seita.9G357500.1 No alias C2H2-type subclass ZAT transcription factor 0.03 Orthogroups_2024-Update
Sobic.001G330200.1 No alias C2H2-type subclass ZAT transcription factor 0.04 Orthogroups_2024-Update
Sobic.001G333700.1 No alias C2H2-type subclass ZAT transcription factor 0.05 Orthogroups_2024-Update
Sobic.005G225700.1 No alias C2H2-type subclass ZAT transcription factor 0.04 Orthogroups_2024-Update
Sobic.008G144500.1 No alias C2H2-type subclass ZAT transcription factor 0.03 Orthogroups_2024-Update
Solyc01g107170 No alias Zinc finger protein (AHRD V3.3 *** A0T3Q5_SOLTU) 0.03 Orthogroups_2024-Update
Solyc06g060480 No alias Zinc finger family protein (AHRD V3.3 *** B9HPY6_POPTR) 0.03 Orthogroups_2024-Update
Solyc11g073060 No alias Zinc finger family protein (AHRD V3.3 *** B9HM54_POPTR) 0.05 Orthogroups_2024-Update
Sopen06g032200 No alias C2H2-type zinc finger 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0009733 response to auxin IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0042221 response to chemical IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!