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  5. Sobic.001G086500.1

Sobic.001G086500.1


Description : regulatory protein *(AP1/CAL/FUL) of floral meristem identity control & MADS/AGL-type transcription factor


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G086500.1
Cluster HCAA Clusters: Cluster_210

Target Alias Description ECC score Gene Family Method Actions
At1g24260 No alias At1g24260 [Source:UniProtKB/TrEMBL;Acc:B4F7R9] 0.02 Orthogroups_2024-Update
At1g69120 No alias AP1 [Source:UniProtKB/TrEMBL;Acc:A0A178W846] 0.03 Orthogroups_2024-Update
At5g20240 No alias Floral homeotic protein PISTILLATA... 0.03 Orthogroups_2024-Update
At5g23260 No alias K-box region and MADS-box transcription factor family... 0.03 Orthogroups_2024-Update
Bradi2g24940 No alias K-box region and MADS-box transcription factor family protein 0.05 Orthogroups_2024-Update
Bradi2g43290 No alias AGAMOUS-like 62 0.02 Orthogroups_2024-Update
Bradi4g06867 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Brara.C00694.1 No alias regulatory protein *(SEPALLATA) of floral meristem... 0.04 Orthogroups_2024-Update
Brara.C01460.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Brara.I02486.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
GRMZM2G171365 No alias AGAMOUS-like 20 0.02 Orthogroups_2024-Update
Glyma.13G052700 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Glyma.18G004700 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Glyma.20G136700 No alias AGAMOUS-like 62 0.03 Orthogroups_2024-Update
HORVU1Hr1G063620.2 No alias component *(PISTILLATA) of AP3-PISTILLATA organ-identity... 0.03 Orthogroups_2024-Update
HORVU6Hr1G002270.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Kfl00560_0030 kfl00560_0030_v1.... (q40872|ag_pangi : 148.0) Floral homeotic protein... 0.02 Orthogroups_2024-Update
LOC_Os06g45650 No alias OsMADS30 - MADS-box family gene with MIKCc type-box, expressed 0.02 Orthogroups_2024-Update
LOC_Os07g41370 No alias OsMADS18 - MADS-box family gene with MIKCc type-box, expressed 0.03 Orthogroups_2024-Update
PSME_00017701-RA No alias (at4g16370 : 263.0) Encodes an oligopeptide transporter... 0.02 Orthogroups_2024-Update
PSME_00053030-RA No alias (q6q9i1|mads7_orysa : 100.0) MADS-box transcription... 0.02 Orthogroups_2024-Update
Potri.004G064300 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Potri.004G131100 No alias AGAMOUS-like 29 0.03 Orthogroups_2024-Update
Potri.010G154100 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Seita.4G093200.1 No alias MADS/AGL-type transcription factor 0.04 Orthogroups_2024-Update
Sobic.001G455900.1 No alias regulatory protein *(SEPALLATA) of floral meristem... 0.04 Orthogroups_2024-Update
Solyc03g019710 No alias TDR8 0.03 Orthogroups_2024-Update
Sopen12g029050 No alias SRF-type transcription factor (DNA-binding and... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0003700 DNA-binding transcription factor activity IEA 16Dec
CC GO:0005634 nucleus IEA 16Dec
BP GO:0006355 regulation of transcription, DNA-templated IEA 16Dec
MF GO:0046983 protein dimerization activity IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
IPR002487 TF_Kbox 84 172
No external refs found!