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  5. Sobic.001G099900.1

Sobic.001G099900.1


Description : SSU processome assembly factor *(UTP4/PCN)


Gene families : OG_42_0004547 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004547_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G099900.1
Cluster HCAA Clusters: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
Bradi1g09530 No alias Transducin family protein / WD-40 repeat family protein 0.06 Orthogroups_2024-Update
Brara.C02553.1 No alias SSU processome assembly factor *(UTP4/PCN) 0.06 Orthogroups_2024-Update
Brara.H02048.1 No alias SSU processome assembly factor *(UTP4/PCN) 0.07 Orthogroups_2024-Update
Brara.I03013.1 No alias SSU processome assembly factor *(UTP4/PCN) 0.04 Orthogroups_2024-Update
Cre13.g606850 No alias Transducin family protein / WD-40 repeat family protein 0.12 Orthogroups_2024-Update
Glyma.14G089042 No alias Transducin family protein / WD-40 repeat family protein 0.04 Orthogroups_2024-Update
Glyma.17G233900 No alias Transducin family protein / WD-40 repeat family protein 0.03 Orthogroups_2024-Update
Kfl00551_0060 kfl00551_0060_v1.... (at4g07410 : 324.0) Transducin family protein / WD-40... 0.04 Orthogroups_2024-Update
Potri.014G014900 No alias Transducin family protein / WD-40 repeat family protein 0.04 Orthogroups_2024-Update
Pp1s71_289V6 No alias F28D6.14; transducin family protein / WD-40 repeat... 0.06 Orthogroups_2024-Update
Seita.9G102800.1 No alias SSU processome assembly factor *(UTP4/PCN) 0.17 Orthogroups_2024-Update
Solyc04g077680 No alias Transducin family protein / WD-40 repeat family protein... 0.12 Orthogroups_2024-Update
Sopen04g031320 No alias WD domain, G-beta repeat 0.05 Orthogroups_2024-Update
Sopen12g030290 No alias WD domain, G-beta repeat 0.02 Orthogroups_2024-Update
evm.model.tig00000852.39 No alias (at4g07410 : 188.0) Transducin family protein / WD-40... 0.08 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0004559 alpha-mannosidase activity IEP Predicted GO
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP Predicted GO
MF GO:0004743 pyruvate kinase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006013 mannose metabolic process IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006098 pentose-phosphate shunt IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006732 coenzyme metabolic process IEP Predicted GO
BP GO:0006733 oxidoreduction coenzyme metabolic process IEP Predicted GO
BP GO:0006739 NADP metabolic process IEP Predicted GO
BP GO:0006753 nucleoside phosphate metabolic process IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0009117 nucleotide metabolic process IEP Predicted GO
MF GO:0015923 mannosidase activity IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0019362 pyridine nucleotide metabolic process IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
BP GO:0019693 ribose phosphate metabolic process IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
MF GO:0030955 potassium ion binding IEP Predicted GO
MF GO:0031420 alkali metal ion binding IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0046496 nicotinamide nucleotide metabolic process IEP Predicted GO
BP GO:0051156 glucose 6-phosphate metabolic process IEP Predicted GO
BP GO:0051186 cofactor metabolic process IEP Predicted GO
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
BP GO:0072524 pyridine-containing compound metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 216 239
No external refs found!