Sobic.001G106000.2

Description : KNOX-type transcription factor

Gene families : OG_42_0000234 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000234_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.001G106000.2
Cluster	HCAA Clusters: Cluster_262

Target	Alias	Description	ECC score	Gene Family Method
A4A49_16490	No alias	homeobox protein knotted-1-like 1	0.01	Orthogroups_2024-Update
At4g08150	No alias	Homeobox protein knotted-1-like 1...	0.02	Orthogroups_2024-Update
Brara.B01915.1	No alias	KNOX-type transcription factor	0.03	Orthogroups_2024-Update
Brara.H02211.1	No alias	KNOX-type transcription factor	0.04	Orthogroups_2024-Update
Brara.I01459.1	No alias	KNOX-type transcription factor	0.04	Orthogroups_2024-Update
Glyma.18G083100	No alias	KNOTTED1-like homeobox gene 5	0.02	Orthogroups_2024-Update
HORVU4Hr1G003410.3	No alias	KNOX-type transcription factor	0.03	Orthogroups_2024-Update
LOC_Os07g03770	No alias	Homeobox domain containing protein, expressed	0.04	Orthogroups_2024-Update
MA_303404g0010	No alias	(o04135\|knap2_maldo : 178.0) Homeobox protein...	0.02	Orthogroups_2024-Update
PSME_00033425-RA	No alias	(o04135\|knap2_maldo : 176.0) Homeobox protein...	0.03	Orthogroups_2024-Update
PSME_00035379-RA	No alias	(o04135\|knap2_maldo : 179.0) Homeobox protein...	0.02	Orthogroups_2024-Update
PSME_00035381-RA	No alias	(p46609\|osh1_orysa : 118.0) Homeobox protein OSH1 -...	0.02	Orthogroups_2024-Update
Potri.012G087100	No alias	KNOTTED1-like homeobox gene 6	0.03	Orthogroups_2024-Update
Seita.9G074700.1	No alias	KNOX-type transcription factor	0.03	Orthogroups_2024-Update
Sopen01g044020	No alias	KNOX2 domain	0.03	Orthogroups_2024-Update
Sopen05g001110	No alias	KNOX2 domain	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	16Dec
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	16Dec
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000154	rRNA modification	IEP	Predicted GO
BP	GO:0001510	RNA methylation	IEP	Predicted GO
MF	GO:0008134	transcription factor binding	IEP	Predicted GO
MF	GO:0008170	N-methyltransferase activity	IEP	Predicted GO
MF	GO:0008649	rRNA methyltransferase activity	IEP	Predicted GO
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Predicted GO
BP	GO:0009690	cytokinin metabolic process	IEP	Predicted GO
BP	GO:0010817	regulation of hormone levels	IEP	Predicted GO
MF	GO:0016436	rRNA (uridine) methyltransferase activity	IEP	Predicted GO
MF	GO:0017025	TBP-class protein binding	IEP	Predicted GO
MF	GO:0019139	cytokinin dehydrogenase activity	IEP	Predicted GO
BP	GO:0031167	rRNA methylation	IEP	Predicted GO
BP	GO:0034754	cellular hormone metabolic process	IEP	Predicted GO
BP	GO:0042445	hormone metabolic process	IEP	Predicted GO
MF	GO:0070042	rRNA (uridine-N3-)-methyltransferase activity	IEP	Predicted GO
BP	GO:0070475	rRNA base methylation	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR005540	KNOX1	85	125
IPR008422	Homeobox_KN_domain	275	314
IPR005541	KNOX2	141	185
IPR005539	ELK_dom	235	256

External Links

No external refs found!

Sobic.001G106000.2

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation