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  5. Sobic.001G110000.1

Sobic.001G110000.1


Description : histone *(H2A)


Gene families : OG_42_0000138 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000138_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G110000.1
Cluster HCAA Clusters: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
73637 No alias gamma histone variant H2AX 0.03 Orthogroups_2024-Update
At4g27230 No alias Probable histone H2A.3 [Source:UniProtKB/Swiss-Prot;Acc:O81826] 0.03 Orthogroups_2024-Update
At5g59870 No alias Probable histone H2A.7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJE8] 0.03 Orthogroups_2024-Update
Brara.B01060.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Brara.E02150.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Brara.J01356.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Cre17.g709200 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Glyma.13G333800 No alias histone H2A 12 0.04 Orthogroups_2024-Update
Glyma.13G334300 No alias histone H2A 12 0.04 Orthogroups_2024-Update
Glyma.19G234100 No alias histone H2A 7 0.03 Orthogroups_2024-Update
HORVU2Hr1G043860.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Seita.2G343300.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 95 127
IPR007125 Histone_H2A/H2B/H3 13 92
No external refs found!