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  5. Sobic.001G117600.1

Sobic.001G117600.1


Description : Unknown function


Gene families : OG_42_0002530 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002530_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G117600.1
Cluster HCAA Clusters: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
Brara.I01471.1 No alias RNA editing factor *(MEF9) 0.03 Orthogroups_2024-Update
GRMZM2G077320 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.08G096900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.16G022100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Orthogroups_2024-Update
Glyma.17G024100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
PSME_00024555-RA No alias (at4g02750 : 413.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
Sobic.007G182600.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Sopen05g005200 No alias PPR repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 347 394
IPR002885 Pentatricopeptide_repeat 245 293
IPR002885 Pentatricopeptide_repeat 151 179
IPR002885 Pentatricopeptide_repeat 186 211
IPR002885 Pentatricopeptide_repeat 422 444
No external refs found!