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  5. Sobic.001G126800.1

Sobic.001G126800.1


Description : substrate adaptor of CUL4-based E3 ubiquitin ligase complex


Gene families : OG_42_0004472 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004472_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G126800.1
Cluster HCAA Clusters: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
Kfl00110_0030 kfl00110_0030_v1.1 (at3g27640 : 283.0) Transducin/WD40 repeat-like... 0.02 Orthogroups_2024-Update
evm.model.contig_4495.7 No alias (at3g27640 : 142.0) Transducin/WD40 repeat-like... 0.05 Orthogroups_2024-Update
evm.model.tig00001003.15 No alias (at3g27640 : 89.7) Transducin/WD40 repeat-like... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
BP GO:0042221 response to chemical IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 367 401
IPR001680 WD40_repeat 149 188
IPR001680 WD40_repeat 231 259
IPR001680 WD40_repeat 333 356
IPR001680 WD40_repeat 114 145
No external refs found!