Sobic.001G130301.1

Description : component *(eS21) of small ribosomal-subunit (SSU) proteome

Gene families : OG_42_0002517 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002517_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.001G130301.1
Cluster	HCAA Clusters: Cluster_43

Target	Alias	Description	ECC score	Gene Family Method
271040	No alias	Ribosomal protein S21e	0.06	Orthogroups_2024-Update
Bradi1g62691	No alias	Ribosomal protein S21e	0.09	Orthogroups_2024-Update
Brara.F02849.1	No alias	component *(eS21) of small ribosomal-subunit (SSU) proteome	0.06	Orthogroups_2024-Update
Brara.I03670.1	No alias	component *(eS21) of small ribosomal-subunit (SSU) proteome	0.13	Orthogroups_2024-Update
Cre03.g203450	No alias	Ribosomal protein S21e	0.04	Orthogroups_2024-Update
GRMZM2G125300	No alias	Ribosomal protein S21e	0.03	Orthogroups_2024-Update
GRMZM2G134109	No alias	Ribosomal protein S21e	0.05	Orthogroups_2024-Update
Glyma.09G045000	No alias	Ribosomal protein S21e	0.08	Orthogroups_2024-Update
Glyma.15G147700	No alias	Ribosomal protein S21e	0.06	Orthogroups_2024-Update
Kfl00268_0170	kfl00268_0170_v1.1	(p35687\|rs21_orysa : 140.0) 40S ribosomal protein S21 -...	0.05	Orthogroups_2024-Update
MA_21647g0010	No alias	(at5g27700 : 150.0) Ribosomal protein S21e ; FUNCTIONS...	0.06	Orthogroups_2024-Update
PSME_00047574-RA	No alias	(at5g27700 : 115.0) Ribosomal protein S21e ; FUNCTIONS...	0.04	Orthogroups_2024-Update
Potri.005G026000	No alias	Ribosomal protein S21e	0.06	Orthogroups_2024-Update
Potri.013G017600	No alias	Ribosomal protein S21e	0.04	Orthogroups_2024-Update
Pp1s306_29V6	No alias	40s ribosomal protein	0.06	Orthogroups_2024-Update
Pp1s372_10V6	No alias	40s ribosomal protein	0.11	Orthogroups_2024-Update
Pp1s73_165V6	No alias	40s ribosomal protein	0.07	Orthogroups_2024-Update
Solyc01g066840	No alias	40S ribosomal protein S21 (AHRD V3.3 *** A0A0V0GU27_SOLCH)	0.12	Orthogroups_2024-Update
Solyc04g074910	No alias	40S ribosomal protein S21 (AHRD V3.3 *** M0ZPV5_SOLTU)	0.03	Orthogroups_2024-Update
Sopen01g028440	No alias	Ribosomal protein S21e	0.06	Orthogroups_2024-Update
Sopen04g029860	No alias	Ribosomal protein S21e	0.02	Orthogroups_2024-Update
evm.model.contig_2342.3	No alias	(p35687\|rs21_orysa : 96.3) 40S ribosomal protein S21 -...	0.1	Orthogroups_2024-Update
evm.model.tig00020780.14	No alias	(at5g27700 : 110.0) Ribosomal protein S21e ; FUNCTIONS...	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000105	histidine biosynthetic process	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0004019	adenylosuccinate synthase activity	IEP	Predicted GO
CC	GO:0005744	TIM23 mitochondrial import inner membrane translocase complex	IEP	Predicted GO
BP	GO:0006520	cellular amino acid metabolic process	IEP	Predicted GO
BP	GO:0006547	histidine metabolic process	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
BP	GO:0006839	mitochondrial transport	IEP	Predicted GO
BP	GO:0009072	aromatic amino acid family metabolic process	IEP	Predicted GO
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	Predicted GO
MF	GO:0016874	ligase activity	IEP	Predicted GO
BP	GO:0017038	protein import	IEP	Predicted GO
BP	GO:0018130	heterocycle biosynthetic process	IEP	Predicted GO
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Predicted GO
BP	GO:0030150	protein import into mitochondrial matrix	IEP	Predicted GO
BP	GO:0033365	protein localization to organelle	IEP	Predicted GO
BP	GO:0034613	cellular protein localization	IEP	Predicted GO
BP	GO:0044281	small molecule metabolic process	IEP	Predicted GO
CC	GO:0044455	mitochondrial membrane part	IEP	Predicted GO
BP	GO:0044743	protein transmembrane import into intracellular organelle	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
BP	GO:0052803	imidazole-containing compound metabolic process	IEP	Predicted GO
BP	GO:0065002	intracellular protein transmembrane transport	IEP	Predicted GO
BP	GO:0070585	protein localization to mitochondrion	IEP	Predicted GO
BP	GO:0070727	cellular macromolecule localization	IEP	Predicted GO
BP	GO:0071806	protein transmembrane transport	IEP	Predicted GO
BP	GO:0072594	establishment of protein localization to organelle	IEP	Predicted GO
BP	GO:0072655	establishment of protein localization to mitochondrion	IEP	Predicted GO
CC	GO:0098798	mitochondrial protein complex	IEP	Predicted GO
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Predicted GO
BP	GO:1990542	mitochondrial transmembrane transport	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001931	Ribosomal_S21e	114	189

External Links

No external refs found!

Sobic.001G130301.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation