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  5. Sobic.001G136150.1

Sobic.001G136150.1


Description : Unknown function


Gene families : OG_42_0000134 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000134_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G136150.1
Cluster HCAA Clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
At5g21150 No alias Protein argonaute 9 [Source:UniProtKB/Swiss-Prot;Acc:Q84VQ0] 0.04 Orthogroups_2024-Update
Bradi3g60697 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.02 Orthogroups_2024-Update
Bradi5g21800 No alias Argonaute family protein 0.03 Orthogroups_2024-Update
Brara.J01515.1 No alias siRNA-integrating factor *(AGO) 0.03 Orthogroups_2024-Update
Brara.J01517.1 No alias siRNA-integrating factor *(AGO) 0.03 Orthogroups_2024-Update
GRMZM2G450474 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.02 Orthogroups_2024-Update
GRMZM2G589579 No alias Argonaute family protein 0.01 Orthogroups_2024-Update
Glyma.05G011300 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.03 Orthogroups_2024-Update
Glyma.12G083500 No alias Argonaute family protein 0.03 Orthogroups_2024-Update
HORVU0Hr1G012490.26 No alias siRNA-integrating factor *(AGO) 0.03 Orthogroups_2024-Update
HORVU2Hr1G031130.2 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU2Hr1G045050.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU3Hr1G021290.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU4Hr1G004010.8 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G036840.2 No alias miRNA recruiting factor (AGO) of RNA-induced silencing... 0.07 Orthogroups_2024-Update
HORVU7Hr1G107770.4 No alias siRNA-integrating factor *(AGO) 0.02 Orthogroups_2024-Update
LOC_Os02g45070 No alias PINHEAD, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g39640 No alias PINHEAD, putative, expressed 0.02 Orthogroups_2024-Update
Mp8g08610.1 No alias siRNA-integrating factor (AGO) 0.02 Orthogroups_2024-Update
PSME_00001016-RA No alias (at5g43810 : 1422.0) Encodes a member of the EIF2C... 0.06 Orthogroups_2024-Update
PSME_00003897-RA No alias (at5g43810 : 374.0) Encodes a member of the EIF2C... 0.03 Orthogroups_2024-Update
PSME_00043545-RA No alias (at1g69440 : 303.0) Encodes ARGONAUTE7, a member of the... 0.04 Orthogroups_2024-Update
Potri.006G118600 No alias Argonaute family protein 0.03 Orthogroups_2024-Update
Pp1s19_179V6 No alias argonaute protein group 0.02 Orthogroups_2024-Update
Seita.2G310600.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.7G236800.1 No alias siRNA-binding factor *(AGO2) of non-canonical RdDM pathway 0.03 Orthogroups_2024-Update
Sobic.001G053700.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G331800.1 No alias regulatory protein *(AGO7) of transacting siRNA pathway 0.02 Orthogroups_2024-Update
Sobic.006G215000.1 No alias siRNA-binding factor *(AGO2) of non-canonical RdDM pathway 0.04 Orthogroups_2024-Update
Solyc06g073540 No alias Argonaute4b 0.03 Orthogroups_2024-Update
Sopen02g018440 No alias Piwi domain 0.02 Orthogroups_2024-Update
evm.model.contig_2082.8 No alias (at1g48410 : 352.0) Encodes an RNA Slicer that... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004857 enzyme inhibitor activity IEP Predicted GO
MF GO:0004866 endopeptidase inhibitor activity IEP Predicted GO
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP Predicted GO
MF GO:0005484 SNAP receptor activity IEP Predicted GO
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Predicted GO
MF GO:0016790 thiolester hydrolase activity IEP Predicted GO
MF GO:0030234 enzyme regulator activity IEP Predicted GO
MF GO:0030414 peptidase inhibitor activity IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
MF GO:0061134 peptidase regulator activity IEP Predicted GO
MF GO:0061135 endopeptidase regulator activity IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
InterPro domains Description Start Stop
IPR032473 Argonaute_Mid_dom 283 362
IPR003165 Piwi 381 701
IPR032472 ArgoL2 227 273
IPR003100 PAZ_dom 110 217
IPR014811 ArgoL1 37 87
No external refs found!