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  5. Sobic.001G154700.1

Sobic.001G154700.1


Description : Unknown function


Gene families : OG_42_0000590 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000590_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G154700.1
Cluster HCAA Clusters: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
Bradi2g01791 No alias Protein with RING/U-box and TRAF-like domains 0.03 Orthogroups_2024-Update
GRMZM2G008123 No alias Protein with RING/U-box and TRAF-like domains 0.03 Orthogroups_2024-Update
HORVU3Hr1G004950.1 No alias E3 ubiquitin ligase *(SINA) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IEA 16Dec
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA 16Dec
BP GO:0007275 multicellular organism development IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004474 malate synthase activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006097 glyoxylate cycle IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
MF GO:0016409 palmitoyltransferase activity IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0046487 glyoxylate metabolic process IEP Predicted GO
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR018121 7-in-absentia-prot_TRAF-dom 62 130
No external refs found!