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  5. Sobic.001G174300.1

Sobic.001G174300.1


Description : GRAS-type transcription factor


Gene families : OG_42_0000237 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000237_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G174300.1
Cluster HCAA Clusters: Cluster_213

Target Alias Description ECC score Gene Family Method Actions
Bradi2g52227 No alias GRAS family transcription factor 0.03 Orthogroups_2024-Update
Bradi4g09190 No alias GRAS family transcription factor 0.03 Orthogroups_2024-Update
Bradi4g09239 No alias GRAS family transcription factor 0.02 Orthogroups_2024-Update
GRMZM2G028608 No alias GRAS family transcription factor 0.02 Orthogroups_2024-Update
GRMZM2G346706 No alias SCARECROW-like 14 0.02 Orthogroups_2024-Update
LOC_Os03g48450 No alias SCARECROW, putative, expressed 0.03 Orthogroups_2024-Update
Potri.001G241900 No alias SCARECROW-like 14 0.03 Orthogroups_2024-Update
Potri.001G242000 No alias SCARECROW-like 14 0.03 Orthogroups_2024-Update
Pp1s20_86V6 No alias contains ESTs AU162304(E60027),AU030624(E60027) similar... 0.02 Orthogroups_2024-Update
Seita.8G250000.1 No alias GRAS-type transcription factor 0.04 Orthogroups_2024-Update
Seita.9G174900.1 No alias GRAS-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.005G229900.1 No alias GRAS-type transcription factor 0.02 Orthogroups_2024-Update
Sobic.005G230000.1 No alias GRAS-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.005G230300.2 No alias GRAS-type transcription factor 0.05 Orthogroups_2024-Update
Sopen01g043700 No alias GRAS domain family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0009605 response to external stimulus IEP Predicted GO
BP GO:0009607 response to biotic stimulus IEP Predicted GO
BP GO:0009617 response to bacterium IEP Predicted GO
BP GO:0009620 response to fungus IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Predicted GO
MF GO:0016790 thiolester hydrolase activity IEP Predicted GO
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0042742 defense response to bacterium IEP Predicted GO
BP GO:0043207 response to external biotic stimulus IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
BP GO:0050832 defense response to fungus IEP Predicted GO
BP GO:0051704 multi-organism process IEP Predicted GO
BP GO:0051707 response to other organism IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
BP GO:0098542 defense response to other organism IEP Predicted GO
InterPro domains Description Start Stop
IPR005202 TF_GRAS 370 740
No external refs found!