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  5. Sobic.001G175500.1

Sobic.001G175500.1


Description : regulatory protein of DNA methylation pathway *(IDN/IDP)


Gene families : OG_42_0000478 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000478_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G175500.1
Cluster HCAA Clusters: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
Bradi1g54670 No alias XH/XS domain-containing protein 0.03 Orthogroups_2024-Update
Brara.F01713.1 No alias regulatory protein of DNA methylation pathway *(IDN/IDP) 0.02 Orthogroups_2024-Update
Brara.G02053.1 No alias regulatory protein of DNA methylation pathway *(IDN/IDP) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0031047 gene silencing by RNA IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0010309 acireductone dioxygenase [iron(II)-requiring] activity IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR005381 Znf-XS_domain 42 83
IPR005379 Uncharacterised_XH 497 624
IPR005380 XS_domain 111 221
No external refs found!