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  5. At3g29230

At3g29230


Description : Pentatricopeptide repeat-containing protein At3g29230 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS72]


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At3g29230
Cluster HCCA clusters: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
105356 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
109721 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
424099 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
92492 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
94907 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
Bradi2g06450 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi2g15700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Bradi3g51740 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi4g15307 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi5g01440 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi5g12970 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.A00474.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.A00983.1 No alias RNA editing factor *(DOT4) 0.03 Orthogroups_2024-Update
Brara.C02021.1 No alias Unknown function 0.09 Orthogroups_2024-Update
Brara.E03135.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.F00415.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Brara.G01478.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.I01685.1 No alias RNA editing factor *(PGN) 0.03 Orthogroups_2024-Update
Brara.I02594.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Brara.I04209.1 No alias RNA editing factor *(MEF100) 0.04 Orthogroups_2024-Update
GRMZM2G073460 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G161368 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.01G228000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.02G071600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.03G189000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.05G125500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.05G240300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.07G033300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.07G159200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 Orthogroups_2024-Update
Glyma.07G249400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G086500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Orthogroups_2024-Update
Glyma.09G168800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G286300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G005600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G183600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.13G179700 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.13G313200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 Orthogroups_2024-Update
Glyma.17G072100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
Glyma.17G175800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.18G287500 No alias mitochondrial editing factor 22 0.04 Orthogroups_2024-Update
Glyma.19G141800 No alias mitochondrial RNAediting factor 1 0.03 Orthogroups_2024-Update
HORVU3Hr1G019130.5 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G047250.4 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G105080.1 No alias RNA editing factor *(OTP85) 0.03 Orthogroups_2024-Update
HORVU6Hr1G091320.4 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os01g45840 No alias CRR2, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os01g74600 No alias vegetative storage protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g32620 No alias pentatricopeptide, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os05g33920 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g36350 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g02200 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os09g24680 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00005325-RA No alias (at3g13770 : 417.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00005439-RA No alias (at2g03880 : 518.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00038145-RA No alias (at5g52630 : 598.0) Encodes a member of the DYW... 0.02 Orthogroups_2024-Update
PSME_00048055-RA No alias (at4g13650 : 598.0) Pentatricopeptide repeat (PPR)... 0.01 Orthogroups_2024-Update
Potri.003G058700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Orthogroups_2024-Update
Potri.003G074500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Potri.006G105700 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.010G086200 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.016G077700 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Seita.1G102000.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Seita.2G247200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.4G046800.1 No alias RNA editing factor *(MEF29) 0.01 Orthogroups_2024-Update
Seita.5G065900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.5G361000.1 No alias RNA editing factor *(MEF10) 0.02 Orthogroups_2024-Update
Seita.7G205600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G001200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G151300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G444200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G048200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G337200.1 No alias RNA editing factor *(MEF10) 0.02 Orthogroups_2024-Update
Solyc01g098150 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc01g112200 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc03g116840 No alias BED zinc finger,hAT family dimerization domain (AHRD... 0.03 Orthogroups_2024-Update
Solyc03g119950 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.02 Orthogroups_2024-Update
Sopen02g024180 No alias PPR repeat family 0.04 Orthogroups_2024-Update
Sopen04g026710 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen05g018650 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen09g031050 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen11g004720 No alias PPR repeat 0.03 Orthogroups_2024-Update
evm.model.contig_2025.47 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Predicted GO
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
BP GO:0001101 response to acid chemical IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0003937 IMP cyclohydrolase activity IEP Predicted GO
MF GO:0004055 argininosuccinate synthase activity IEP Predicted GO
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP Predicted GO
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Predicted GO
MF GO:0004797 thymidine kinase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006098 pentose-phosphate shunt IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006525 arginine metabolic process IEP Predicted GO
BP GO:0006526 arginine biosynthetic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006739 NADP metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009415 response to water IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predicted GO
BP GO:0018193 peptidyl-amino acid modification IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
MF GO:0019136 deoxynucleoside kinase activity IEP Predicted GO
MF GO:0019205 nucleobase-containing compound kinase activity IEP Predicted GO
MF GO:0019206 nucleoside kinase activity IEP Predicted GO
MF GO:0019238 cyclohydrolase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
BP GO:0031167 rRNA methylation IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0036265 RNA (guanine-N7)-methylation IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0051156 glucose 6-phosphate metabolic process IEP Predicted GO
BP GO:0070475 rRNA base methylation IEP Predicted GO
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Predicted GO
MF GO:0070569 uridylyltransferase activity IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0140102 catalytic activity, acting on a rRNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
BP GO:1901700 response to oxygen-containing compound IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 379 426
IPR002885 Pentatricopeptide_repeat 80 127
IPR002885 Pentatricopeptide_repeat 278 324
IPR002885 Pentatricopeptide_repeat 248 273
IPR002885 Pentatricopeptide_repeat 217 246
IPR002885 Pentatricopeptide_repeat 454 478
IPR002885 Pentatricopeptide_repeat 186 215
No external refs found!