Sobic.001G177100.1

Description : regulatory GTPase (NUG1/NSN1) of LSU processome

Gene families : OG_42_0003992 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003992_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.001G177100.1
Cluster	HCAA Clusters: Cluster_164

Target	Alias	Description	ECC score	Gene Family Method
Bradi1g31710	No alias	GTP-binding family protein	0.11	Orthogroups_2024-Update
Bradi1g76700	No alias	GTP-binding family protein	0.11	Orthogroups_2024-Update
Brara.A03628.1	No alias	regulatory GTPase (NUG1/NSN1) of LSU processome	0.05	Orthogroups_2024-Update
Brara.C03191.1	No alias	regulatory GTPase (NUG1/NSN1) of LSU processome	0.11	Orthogroups_2024-Update
Brara.E03243.1	No alias	regulatory GTPase (NUG1/NSN1) of LSU processome	0.07	Orthogroups_2024-Update
Cre12.g533050	No alias	GTP-binding family protein	0.13	Orthogroups_2024-Update
Glyma.10G122200	No alias	GTP-binding family protein	0.05	Orthogroups_2024-Update
HORVU2Hr1G016650.1	No alias	regulatory GTPase (NUG1/NSN1) of LSU processome	0.09	Orthogroups_2024-Update
Kfl00223_0170	kfl00223_0170_v1....	(at3g07050 : 427.0) GTP-binding family protein;...	0.09	Orthogroups_2024-Update
Mp8g17210.1	No alias	NUG1/NSN1 LSU processome regulatory GTPase	0.03	Orthogroups_2024-Update
PSME_00009140-RA	No alias	(at3g07050 : 111.0) GTP-binding family protein;...	0.01	Orthogroups_2024-Update
Potri.002G241100	No alias	GTP-binding family protein	0.07	Orthogroups_2024-Update
Pp1s91_142V6	No alias	guanine nucleotide binding protein 3	0.06	Orthogroups_2024-Update
Seita.9G087300.1	No alias	regulatory GTPase (NUG1/NSN1) of LSU processome	0.2	Orthogroups_2024-Update
Solyc06g083520	No alias	GTP-binding family protein (AHRD V3.3 *** A0A061DNE0_THECC)	0.04	Orthogroups_2024-Update
Solyc09g061430	No alias	nuclear GTPase DQ304482	0.12	Orthogroups_2024-Update
Sopen06g034900	No alias	50S ribosome-binding GTPase	0.08	Orthogroups_2024-Update
Sopen09g024250	No alias	GNL3L/Grn1 putative GTPase	0.11	Orthogroups_2024-Update
evm.model.contig_2299.5	No alias	(at3g07050 : 275.0) GTP-binding family protein;...	0.07	Orthogroups_2024-Update
evm.model.tig00001215.14	No alias	(at3g07050 : 206.0) GTP-binding family protein;...	0.09	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0001882	nucleoside binding	None	Extended
MF	GO:0001883	purine nucleoside binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	16Dec
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032549	ribonucleoside binding	None	Extended
MF	GO:0032550	purine ribonucleoside binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003735	structural constituent of ribosome	IEP	Predicted GO
MF	GO:0005198	structural molecule activity	IEP	Predicted GO
CC	GO:0005730	nucleolus	IEP	Predicted GO
CC	GO:0005840	ribosome	IEP	Predicted GO
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006364	rRNA processing	IEP	Predicted GO
BP	GO:0006396	RNA processing	IEP	Predicted GO
BP	GO:0006412	translation	IEP	Predicted GO
BP	GO:0006518	peptide metabolic process	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
BP	GO:0006807	nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0009059	macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
BP	GO:0016072	rRNA metabolic process	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
CC	GO:0030684	preribosome	IEP	Predicted GO
CC	GO:0032040	small-subunit processome	IEP	Predicted GO
CC	GO:0032991	protein-containing complex	IEP	Predicted GO
BP	GO:0034470	ncRNA processing	IEP	Predicted GO
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
BP	GO:0043043	peptide biosynthetic process	IEP	Predicted GO
BP	GO:0043170	macromolecule metabolic process	IEP	Predicted GO
CC	GO:0043226	organelle	IEP	Predicted GO
CC	GO:0043228	non-membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043229	intracellular organelle	IEP	Predicted GO
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Predicted GO
BP	GO:0043603	cellular amide metabolic process	IEP	Predicted GO
BP	GO:0043604	amide biosynthetic process	IEP	Predicted GO
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Predicted GO
CC	GO:0044444	cytoplasmic part	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO
CC	GO:1990904	ribonucleoprotein complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR014813	Gnl3_N_dom	15	92
IPR006073	GTP_binding_domain	272	336

External Links

No external refs found!

Sobic.001G177100.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation