Sobic.001G177800.1

Description : component *(uL16) of large ribosomal-subunit (LSU) proteome

Gene families : OG_42_0001900 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001900_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.001G177800.1
Cluster	HCAA Clusters: Cluster_124

Target	Alias	Description	ECC score	Gene Family Method
437527	No alias	Ribosomal protein L16p/L10e family protein	0.08	Orthogroups_2024-Update
A4A49_56503	No alias	60s ribosomal protein l10	0.14	Orthogroups_2024-Update
A4A49_60639	No alias	60s ribosomal protein l10	0.16	Orthogroups_2024-Update
At1g14320	No alias	60S ribosomal protein L10-1...	0.04	Orthogroups_2024-Update
At1g26910	No alias	60S ribosomal protein L10-2...	0.03	Orthogroups_2024-Update
At1g66580	No alias	60S ribosomal protein L10-3...	0.05	Orthogroups_2024-Update
Bradi2g34440	No alias	Ribosomal protein L16p/L10e family protein	0.11	Orthogroups_2024-Update
Brara.B01878.1	No alias	component *(uL16) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Brara.F00957.1	No alias	component *(uL16) of large ribosomal-subunit (LSU) proteome	0.24	Orthogroups_2024-Update
Brara.G02465.1	No alias	component *(uL16) of large ribosomal-subunit (LSU) proteome	0.22	Orthogroups_2024-Update
Brara.G02907.1	No alias	component *(uL16) of large ribosomal-subunit (LSU) proteome	0.23	Orthogroups_2024-Update
Brara.H02579.1	No alias	component *(uL16) of large ribosomal-subunit (LSU) proteome	0.15	Orthogroups_2024-Update
Cre09.g388200	No alias	senescence associated gene 24	0.12	Orthogroups_2024-Update
Glyma.02G220000	No alias	Ribosomal protein L16p/L10e family protein	0.2	Orthogroups_2024-Update
Glyma.06G140900	No alias	Ribosomal protein L16p/L10e family protein	0.09	Orthogroups_2024-Update
Glyma.14G187800	No alias	Ribosomal protein L16p/L10e family protein	0.22	Orthogroups_2024-Update
HORVU1Hr1G024710.2	No alias	component *(uL16) of large ribosomal-subunit (LSU) proteome	0.14	Orthogroups_2024-Update
Kfl00865_0050	kfl00865_0050_v1.1	(p93847\|rl10_solme : 387.0) 60S ribosomal protein L10...	0.02	Orthogroups_2024-Update
LOC_Os11g11390	No alias	ribosomal protein, putative, expressed	0.02	Orthogroups_2024-Update
MA_17326g0010	No alias	(p93847\|rl10_solme : 399.0) 60S ribosomal protein L10...	0.05	Orthogroups_2024-Update
Mp4g23990.1	No alias	component RPL10 of LSU proteome component	0.09	Orthogroups_2024-Update
PSME_00015731-RA	No alias	(p93847\|rl10_solme : 394.0) 60S ribosomal protein L10...	0.08	Orthogroups_2024-Update
PSME_00042423-RA	No alias	(p93847\|rl10_solme : 402.0) 60S ribosomal protein L10...	0.05	Orthogroups_2024-Update
Potri.013G159600	No alias	Ribosomal protein L16p/L10e family protein	0.07	Orthogroups_2024-Update
Pp1s22_94V6	No alias	60s ribosomal protein l10-3	0.28	Orthogroups_2024-Update
Pp1s2_197V6	No alias	60s ribosomal protein l10-3	0.06	Orthogroups_2024-Update
Pp1s347_24V6	No alias	60s ribosomal protein l10-3	0.19	Orthogroups_2024-Update
Pp1s447_11V6	No alias	60s ribosomal protein l10-3	0.04	Orthogroups_2024-Update
Seita.1G023800.1	No alias	component *(uL16) of large ribosomal-subunit (LSU) proteome	0.17	Orthogroups_2024-Update
Seita.3G099700.1	No alias	component *(uL16) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Seita.7G273300.1	No alias	component *(uL16) of large ribosomal-subunit (LSU) proteome	0.1	Orthogroups_2024-Update
Solyc06g007520	No alias	60S ribosomal protein L10 (AHRD V3.3 *** RL10_SOLME)	0.25	Orthogroups_2024-Update
Solyc06g082650	No alias	60S ribosomal protein L10 (AHRD V3.3 *** RL10_SOLME)	0.24	Orthogroups_2024-Update
Solyc06g082670	No alias	60S ribosomal protein L10 (AHRD V3.3 *** RL10_SOLME)	0.31	Orthogroups_2024-Update
Sopen06g002430	No alias	Ribosomal protein L16p/L10e	0.29	Orthogroups_2024-Update
Sopen06g034040	No alias	Ribosomal protein L16p/L10e	0.19	Orthogroups_2024-Update
Sopen06g034060	No alias	Ribosomal protein L16p/L10e	0.2	Orthogroups_2024-Update
evm.model.tig00001424.5	No alias	(p45636\|rl102_orysa : 214.0) 60S ribosomal protein L10-2...	0.08	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0001882	nucleoside binding	IEP	Predicted GO
MF	GO:0001883	purine nucleoside binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0003924	GTPase activity	IEP	Predicted GO
MF	GO:0005525	GTP binding	IEP	Predicted GO
CC	GO:0005634	nucleus	IEP	Predicted GO
BP	GO:0006325	chromatin organization	IEP	Predicted GO
BP	GO:0006334	nucleosome assembly	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
MF	GO:0016624	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	IEP	Predicted GO
MF	GO:0019001	guanyl nucleotide binding	IEP	Predicted GO
BP	GO:0022607	cellular component assembly	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
MF	GO:0032549	ribonucleoside binding	IEP	Predicted GO
MF	GO:0032550	purine ribonucleoside binding	IEP	Predicted GO
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predicted GO
BP	GO:0034622	cellular protein-containing complex assembly	IEP	Predicted GO
BP	GO:0034728	nucleosome organization	IEP	Predicted GO
MF	GO:0035596	methylthiotransferase activity	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
BP	GO:0043933	protein-containing complex subunit organization	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
MF	GO:0050497	transferase activity, transferring alkylthio groups	IEP	Predicted GO
MF	GO:0051539	4 iron, 4 sulfur cluster binding	IEP	Predicted GO
BP	GO:0065003	protein-containing complex assembly	IEP	Predicted GO
BP	GO:0065004	protein-DNA complex assembly	IEP	Predicted GO
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Predicted GO
BP	GO:0071840	cellular component organization or biogenesis	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR016180	Ribosomal_L10e/L16	12	166

External Links

No external refs found!

Sobic.001G177800.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation