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  5. Sobic.001G188600.1

Sobic.001G188600.1


Description : Unknown function


Gene families : OG_42_0008298 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008298_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G188600.1
Cluster HCAA Clusters: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Brara.D00515.1 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU5Hr1G093450.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G185600.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Solyc09g010450 No alias Pentatricopeptide repeat (PPR) superfamily protein (AHRD... 0.03 Orthogroups_2024-Update
Sopen09g005190 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Predicted GO
MF GO:0004645 phosphorylase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008184 glycogen phosphorylase activity IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 440 489
IPR002885 Pentatricopeptide_repeat 370 419
IPR002885 Pentatricopeptide_repeat 300 349
IPR002885 Pentatricopeptide_repeat 545 594
IPR002885 Pentatricopeptide_repeat 619 664
IPR002885 Pentatricopeptide_repeat 195 242
IPR002885 Pentatricopeptide_repeat 262 287
IPR002885 Pentatricopeptide_repeat 507 539
No external refs found!