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  5. Sobic.001G199800.1

Sobic.001G199800.1


Description : contact site protein (VAP27) of ER-cytoskeleton-plasmamembrane interface


Gene families : OG_42_0000404 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000404_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G199800.1
Cluster HCAA Clusters: Cluster_197

Target Alias Description ECC score Gene Family Method Actions
Glyma.07G252000 No alias vamp/synaptobrevin-associated protein 27-2 0.09 Orthogroups_2024-Update
Kfl00193_0170 kfl00193_0170_v1.... (at3g60600 : 183.0) Encodes VAP27 (for... 0.01 Orthogroups_2024-Update
Potri.005G044900 No alias vamp/synaptobrevin-associated protein 27-2 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Predicted GO
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
BP GO:0006488 dolichol-linked oligosaccharide biosynthetic process IEP Predicted GO
BP GO:0006490 oligosaccharide-lipid intermediate biosynthetic process IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
CC GO:0008287 protein serine/threonine phosphatase complex IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
MF GO:0019208 phosphatase regulator activity IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
MF GO:0019888 protein phosphatase regulator activity IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
BP GO:0044255 cellular lipid metabolic process IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
BP GO:1901135 carbohydrate derivative metabolic process IEP Predicted GO
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1903293 phosphatase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000535 MSP_dom 8 109
No external refs found!