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  5. Sobic.001G224200.1

Sobic.001G224200.1


Description : regulatory protein *(NCL) of rRNA transcription


Gene families : OG_42_0002553 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002553_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G224200.1
Cluster HCAA Clusters: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
234317 No alias nucleolin like 2 0.03 Orthogroups_2024-Update
A4A49_01475 No alias nucleolin 2 0.03 Orthogroups_2024-Update
At1g48920 No alias Nucleolin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVQ1] 0.05 Orthogroups_2024-Update
Bradi3g14907 No alias nucleolin like 2 0.05 Orthogroups_2024-Update
Brara.E01715.1 No alias regulatory protein *(NCL) of rRNA transcription 0.09 Orthogroups_2024-Update
Brara.F00386.1 No alias regulatory protein *(NCL) of rRNA transcription 0.07 Orthogroups_2024-Update
Brara.H00330.1 No alias regulatory protein *(NCL) of rRNA transcription 0.07 Orthogroups_2024-Update
GRMZM2G001850 No alias nucleolin like 2 0.06 Orthogroups_2024-Update
Glyma.11G101500 No alias nucleolin like 2 0.03 Orthogroups_2024-Update
Glyma.12G027400 No alias nucleolin like 2 0.04 Orthogroups_2024-Update
HORVU2Hr1G103520.7 No alias regulatory protein *(NCL) of rRNA transcription 0.05 Orthogroups_2024-Update
HORVU7Hr1G068630.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Kfl00563_0110 kfl00563_0110_v1.... (at1g48920 : 147.0) Encodes ATNUC-L1 (NUCLEOLIN LIKE 1),... 0.04 Orthogroups_2024-Update
Mp1g21390.1 No alias rDNA chromatin transcription factor (NCL) 0.02 Orthogroups_2024-Update
PSME_00002216-RA No alias (at1g48920 : 154.0) Encodes ATNUC-L1 (NUCLEOLIN LIKE 1),... 0.03 Orthogroups_2024-Update
Potri.007G071100 No alias nucleolin like 2 0.07 Orthogroups_2024-Update
Seita.6G035600.1 No alias regulatory protein *(NCL) of rRNA transcription 0.16 Orthogroups_2024-Update
Seita.9G227300.1 No alias regulatory protein *(NCL) of rRNA transcription 0.17 Orthogroups_2024-Update
Solyc02g014310 No alias glycine rich protein X55695 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0040008 regulation of growth IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0045927 positive regulation of growth IEP Predicted GO
BP GO:0048518 positive regulation of biological process IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 515 587
IPR000504 RRM_dom 415 483
No external refs found!