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  5. Sobic.001G228300.1

Sobic.001G228300.1


Description : cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)


Gene families : OG_42_0002740 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002740_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G228300.1
Cluster HCAA Clusters: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
Bradi3g28060 No alias plastid transcriptionally active 3 0.05 Orthogroups_2024-Update
Brara.A03775.1 No alias cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3) 0.03 Orthogroups_2024-Update
Glyma.20G221100 No alias plastid transcriptionally active 3 0.03 Orthogroups_2024-Update
Kfl00134_0090 kfl00134_0090_v1.1 (at3g04260 : 185.0) plastid transcriptionally active 3... 0.03 Orthogroups_2024-Update
LOC_Os10g32540 No alias SAP domain containing protein, expressed 0.02 Orthogroups_2024-Update
Potri.019G025100 No alias plastid transcriptionally active 3 0.02 Orthogroups_2024-Update
Seita.9G231500.1 No alias cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3) 0.06 Orthogroups_2024-Update
Solyc04g050540 No alias Pentatricopeptide repeat-containing protein, putative... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0019867 outer membrane IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR003034 SAP_dom 536 568
No external refs found!