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  5. Sobic.001G230000.1

Sobic.001G230000.1


Description : chromatin remodeling factor *(ATRX)


Gene families : OG_42_0004058 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004058_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G230000.1
Cluster HCAA Clusters: Cluster_258

Target Alias Description ECC score Gene Family Method Actions
A4A49_03180 No alias protein chromatin remodeling 20 0.03 Orthogroups_2024-Update
At1g08600 No alias CHR20 [Source:UniProtKB/TrEMBL;Acc:A0A178VZQ9] 0.03 Orthogroups_2024-Update
Bradi3g27970 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 Orthogroups_2024-Update
GRMZM2G435541 No alias P-loop containing nucleoside triphosphate hydrolases... 0.05 Orthogroups_2024-Update
Glyma.10G165000 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 Orthogroups_2024-Update
HORVU1Hr1G038370.1 No alias chromatin remodeling factor *(ATRX) 0.03 Orthogroups_2024-Update
Mp5g21000.1 No alias chromatin remodeling factor (ATRX) 0.03 Orthogroups_2024-Update
Solyc04g050150 No alias RNA helicase DEAH-box13 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
MF GO:0008276 protein methyltransferase activity IEP Predicted GO
MF GO:0008716 D-alanine-D-alanine ligase activity IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
MF GO:0015298 solute:cation antiporter activity IEP Predicted GO
MF GO:0015299 solute:proton antiporter activity IEP Predicted GO
MF GO:0016278 lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
MF GO:0016881 acid-amino acid ligase activity IEP Predicted GO
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predicted GO
MF GO:0022804 active transmembrane transporter activity IEP Predicted GO
MF GO:0042054 histone methyltransferase activity IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
InterPro domains Description Start Stop
IPR001650 Helicase_C 1132 1258
IPR000330 SNF2_N 751 1053
No external refs found!