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  5. Sobic.001G230400.1

Sobic.001G230400.1


Description : pectate lyase & EC_4.2 carbon-oxygen lyase


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G230400.1
Cluster HCAA Clusters: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
At4g22080 No alias Probable pectate lyase 16... 0.04 Orthogroups_2024-Update
Bradi5g01135 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.J02392.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.02 Orthogroups_2024-Update
Brara.J02755.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.02 Orthogroups_2024-Update
MA_10205415g0010 No alias (at5g63180 : 429.0) Pectin lyase-like superfamily... 0.01 Orthogroups_2024-Update
MA_10335560g0010 No alias (at4g13210 : 131.0) Pectin lyase-like superfamily... 0.01 Orthogroups_2024-Update
MA_10437227g0020 No alias (at4g13710 : 576.0) Pectin lyase-like superfamily... 0.01 Orthogroups_2024-Update
Potri.012G091500 No alias Pectin lyase-like superfamily protein 0.01 Orthogroups_2024-Update
Potri.017G078400 No alias Pectate lyase family protein 0.02 Orthogroups_2024-Update
Pp1s112_172V6 No alias pectate lyase 0.03 Orthogroups_2024-Update
Seita.4G033100.1 No alias EC_4.2 carbon-oxygen lyase 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006812 cation transport IEP Predicted GO
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Predicted GO
MF GO:0015399 primary active transmembrane transporter activity IEP Predicted GO
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Predicted GO
BP GO:0015672 monovalent inorganic cation transport IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0022804 active transmembrane transporter activity IEP Predicted GO
BP GO:0034220 ion transmembrane transport IEP Predicted GO
BP GO:0098655 cation transmembrane transport IEP Predicted GO
BP GO:0098660 inorganic ion transmembrane transport IEP Predicted GO
BP GO:0098662 inorganic cation transmembrane transport IEP Predicted GO
BP GO:1902600 proton transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR002022 Pec_lyase 155 335
No external refs found!