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  5. Sobic.001G240000.1

Sobic.001G240000.1


Description : component *(bL28c) of large plastid ribosomal-subunit proteome


Gene families : OG_42_0007957 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007957_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G240000.1
Cluster HCAA Clusters: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
A4A49_16586 No alias 50s ribosomal protein l28, chloroplastic 0.06 Orthogroups_2024-Update
Bradi2g40040 No alias Ribosomal L28 family 0.07 Orthogroups_2024-Update
Brara.D02034.1 No alias component *(bL28c) of large plastid ribosomal-subunit proteome 0.1 Orthogroups_2024-Update
Cre06.g265800 No alias Ribosomal L28 family 0.08 Orthogroups_2024-Update
GRMZM2G038833 No alias Ribosomal L28 family 0.06 Orthogroups_2024-Update
GRMZM2G042061 No alias Ribosomal L28 family 0.06 Orthogroups_2024-Update
Glyma.10G002600 No alias Ribosomal L28 family 0.06 Orthogroups_2024-Update
HORVU1Hr1G000040.1 No alias component *(bL28c) of large plastid ribosomal-subunit proteome 0.04 Orthogroups_2024-Update
Kfl00690_0100 kfl00690_0100_v1.1 (p30956|rk28_tobac : 93.6) 50S ribosomal protein L28,... 0.03 Orthogroups_2024-Update
MA_10426581g0010 No alias (at2g33450 : 140.0) Ribosomal L28 family; FUNCTIONS IN:... 0.04 Orthogroups_2024-Update
Mp4g05120.1 No alias component psRPL28 of large ribosomal subunit proteome 0.03 Orthogroups_2024-Update
Potri.010G068500 No alias Ribosomal L28 family 0.09 Orthogroups_2024-Update
Pp1s229_21V6 No alias ribosomal protein l28 0.07 Orthogroups_2024-Update
Seita.9G244200.1 No alias component *(bL28c) of large plastid ribosomal-subunit proteome 0.21 Orthogroups_2024-Update
Solyc09g090410 No alias 50S ribosomal protein L28, chloroplastic (AHRD V3.3 ***... 0.08 Orthogroups_2024-Update
Sopen09g033320 No alias Ribosomal L28 family 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Predicted GO
MF GO:0005244 voltage-gated ion channel activity IEP Predicted GO
MF GO:0005247 voltage-gated chloride channel activity IEP Predicted GO
MF GO:0005253 anion channel activity IEP Predicted GO
MF GO:0005254 chloride channel activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
CC GO:0005886 plasma membrane IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006605 protein targeting IEP Predicted GO
BP GO:0006612 protein targeting to membrane IEP Predicted GO
BP GO:0006613 cotranslational protein targeting to membrane IEP Predicted GO
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0006821 chloride transport IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008308 voltage-gated anion channel activity IEP Predicted GO
MF GO:0008312 7S RNA binding IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Predicted GO
MF GO:0015108 chloride transmembrane transporter activity IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predicted GO
MF GO:0016832 aldehyde-lyase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0022832 voltage-gated channel activity IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0045047 protein targeting to ER IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
CC GO:0048500 signal recognition particle IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0070972 protein localization to endoplasmic reticulum IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Predicted GO
BP GO:0072657 protein localization to membrane IEP Predicted GO
BP GO:0090150 establishment of protein localization to membrane IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR026569 Ribo_L28/L24 70 128
No external refs found!