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  5. Sobic.001G242900.1

Sobic.001G242900.1


Description : C2H2 subclass IDD transcription factor


Gene families : OG_42_0000119 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000119_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G242900.1
Cluster HCAA Clusters: Cluster_246

Target Alias Description ECC score Gene Family Method Actions
Brara.B02772.1 No alias C2H2 subclass IDD transcription factor 0.03 Orthogroups_2024-Update
Brara.H00083.1 No alias C2H2 subclass IDD transcription factor 0.02 Orthogroups_2024-Update
Brara.I02048.1 No alias C2H2 subclass IDD transcription factor 0.04 Orthogroups_2024-Update
GRMZM2G022213 No alias C2H2-like zinc finger protein 0.03 Orthogroups_2024-Update
Glyma.10G029700 No alias indeterminate(ID)-domain 12 0.04 Orthogroups_2024-Update
MA_12028g0010 No alias (at2g01940 : 315.0) May be involved in an early event in... 0.04 Orthogroups_2024-Update
Potri.008G142500 No alias indeterminate(ID)-domain 5 0.05 Orthogroups_2024-Update
Potri.013G019200 No alias indeterminate(ID)-domain 2 0.03 Orthogroups_2024-Update
Pp1s43_228V6 No alias nucleic acid binding 0.04 Orthogroups_2024-Update
Sopen04g003650 No alias Zinc finger, C2H2 type 0.03 Orthogroups_2024-Update
evm.model.contig_435.15 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
evm.model.contig_535.4 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
BP GO:0048519 negative regulation of biological process IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!