1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.001G255300.1

Sobic.001G255300.1


Description : aromatic amino acid decarboxylase & EC_4.1 carbon-carbon lyase


Gene families : OG_42_0000627 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000627_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G255300.1
Cluster HCAA Clusters: Cluster_154

Target Alias Description ECC score Gene Family Method Actions
At4g28680 No alias L-tyrosine decarboxylase [Source:TAIR;Acc:AT4G28680] 0.02 Orthogroups_2024-Update
Brara.G00044.1 No alias EC_4.1 carbon-carbon lyase & aromatic amino acid decarboxylase 0.03 Orthogroups_2024-Update
Brara.I04706.1 No alias EC_4.1 carbon-carbon lyase & aromatic amino acid decarboxylase 0.03 Orthogroups_2024-Update
GRMZM2G108514 No alias Pyridoxal phosphate (PLP)-dependent transferases... 0.03 Orthogroups_2024-Update
Glyma.09G021700 No alias Pyridoxal phosphate (PLP)-dependent transferases... 0.03 Orthogroups_2024-Update
HORVU3Hr1G005810.1 No alias EC_4.1 carbon-carbon lyase & aromatic amino acid decarboxylase 0.02 Orthogroups_2024-Update
Mp3g19920.1 No alias aromatic L-amino acid decarboxylase 0.03 Orthogroups_2024-Update
Seita.5G332600.1 No alias EC_4.1 carbon-carbon lyase 0.03 Orthogroups_2024-Update
Seita.6G068000.1 No alias EC_4.1 carbon-carbon lyase & aromatic amino acid decarboxylase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0016830 carbon-carbon lyase activity IEA 16Dec
BP GO:0019752 carboxylic acid metabolic process IEA 16Dec
MF GO:0030170 pyridoxal phosphate binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004109 coproporphyrinogen oxidase activity IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006098 pentose-phosphate shunt IEP Predicted GO
BP GO:0006308 DNA catabolic process IEP Predicted GO
BP GO:0006739 NADP metabolic process IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predicted GO
MF GO:0016409 palmitoyltransferase activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0051156 glucose 6-phosphate metabolic process IEP Predicted GO
BP GO:0051186 cofactor metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002129 PyrdxlP-dep_de-COase 49 425
No external refs found!