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  5. Sobic.001G284800.1

Sobic.001G284800.1


Description : histone *(H3)


Gene families : OG_42_0000090 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000090_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G284800.1
Cluster HCAA Clusters: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
At1g75600 No alias Histone H3-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LR02] 0.02 Orthogroups_2024-Update
At4g40040 No alias Histone H3.3 [Source:UniProtKB/Swiss-Prot;Acc:P59169] 0.01 Orthogroups_2024-Update
Glyma.11G241800 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.14G217100 No alias Histone superfamily protein 0.01 Orthogroups_2024-Update
Glyma.17G255602 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
HORVU6Hr1G007470.1 No alias histone *(H3) 0.03 Orthogroups_2024-Update
HORVU7Hr1G100380.1 No alias histone *(H3) 0.01 Orthogroups_2024-Update
LOC_Os11g05730 No alias histone H3, putative, expressed 0.01 Orthogroups_2024-Update
MA_113838g0010 No alias (at5g65360 : 228.0) Histone superfamily protein;... 0.04 Orthogroups_2024-Update
PSME_00011072-RA No alias (at5g10980 : 145.0) Histone superfamily protein;... 0.05 Orthogroups_2024-Update
Solyc05g051500 No alias WEB family protein, chloroplastic (AHRD V3.3 *-*... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0008081 phosphoric diester hydrolase activity IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
MF GO:0042578 phosphoric ester hydrolase activity IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 1 134
No external refs found!