Description : pre-60S ribosomal-subunit proteome nuclear export factor *(NMD3)
Gene families : OG_42_0003734 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003734_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Sorghum bicolor: Sobic.001G288800.1 | |
Cluster | HCAA Clusters: Cluster_46 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Brara.G02624.1 | No alias | pre-60S ribosomal-subunit proteome nuclear export factor *(NMD3) | 0.08 | Orthogroups_2024-Update | |
Cre15.g640250 | No alias | nonsense-mediated mRNA decay NMD3 family protein | 0.06 | Orthogroups_2024-Update | |
Potri.004G085700 | No alias | nonsense-mediated mRNA decay NMD3 family protein | 0.03 | Orthogroups_2024-Update | |
Pp1s100_108V6 | No alias | nonsense-mediated mrna decay protein | 0.07 | Orthogroups_2024-Update | |
evm.model.contig_2070.3 | No alias | (at2g03820 : 363.0) nonsense-mediated mRNA decay NMD3... | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0003743 | translation initiation factor activity | IEP | Predicted GO |
MF | GO:0004602 | glutathione peroxidase activity | IEP | Predicted GO |
MF | GO:0005488 | binding | IEP | Predicted GO |
CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Predicted GO |
BP | GO:0006413 | translational initiation | IEP | Predicted GO |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | Predicted GO |
MF | GO:0031369 | translation initiation factor binding | IEP | Predicted GO |
CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
MF | GO:0097159 | organic cyclic compound binding | IEP | Predicted GO |
MF | GO:1901363 | heterocyclic compound binding | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR007064 | Nmd3_N | 26 | 258 |
No external refs found! |