Sobic.001G288800.1


Description : pre-60S ribosomal-subunit proteome nuclear export factor *(NMD3)


Gene families : OG_42_0003734 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003734_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G288800.1
Cluster HCAA Clusters: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
Brara.G02624.1 No alias pre-60S ribosomal-subunit proteome nuclear export factor *(NMD3) 0.08 Orthogroups_2024-Update
Cre15.g640250 No alias nonsense-mediated mRNA decay NMD3 family protein 0.06 Orthogroups_2024-Update
Potri.004G085700 No alias nonsense-mediated mRNA decay NMD3 family protein 0.03 Orthogroups_2024-Update
Pp1s100_108V6 No alias nonsense-mediated mrna decay protein 0.07 Orthogroups_2024-Update
evm.model.contig_2070.3 No alias (at2g03820 : 363.0) nonsense-mediated mRNA decay NMD3... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0004602 glutathione peroxidase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0031369 translation initiation factor binding IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR007064 Nmd3_N 26 258
No external refs found!