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  5. Sobic.001G289600.1

Sobic.001G289600.1


Description : regulatory protein *(SUO) of miRNA biogenesis pathway


Gene families : OG_42_0002194 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002194_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G289600.1
Cluster HCAA Clusters: Cluster_69

Target Alias Description ECC score Gene Family Method Actions
440870 No alias BAH domain ;TFIIS helical bundle-like domain 0.03 Orthogroups_2024-Update
A4A49_09389 No alias hypothetical protein 0.03 Orthogroups_2024-Update
At3g48050 No alias Protein SUO [Source:UniProtKB/TrEMBL;Acc:F4JCS8] 0.03 Orthogroups_2024-Update
Bradi3g59560 No alias BAH domain ;TFIIS helical bundle-like domain 0.04 Orthogroups_2024-Update
Bradi3g59577 No alias BAH domain ;TFIIS helical bundle-like domain 0.03 Orthogroups_2024-Update
Glyma.04G180100 No alias BAH domain ;TFIIS helical bundle-like domain 0.03 Orthogroups_2024-Update
Glyma.06G184600 No alias BAH domain ;TFIIS helical bundle-like domain 0.05 Orthogroups_2024-Update
LOC_Os02g50840 No alias BAH domain containing protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_10428034g0020 No alias (at3g48050 : 451.0) BAH domain ;TFIIS helical... 0.02 Orthogroups_2024-Update
MA_10431147g0010 No alias (at3g48050 : 181.0) BAH domain ;TFIIS helical... 0.02 Orthogroups_2024-Update
PSME_00037659-RA No alias (at3g48050 : 320.0) BAH domain ;TFIIS helical... 0.05 Orthogroups_2024-Update
Potri.015G072900 No alias BAH domain ;TFIIS helical bundle-like domain 0.02 Orthogroups_2024-Update
Seita.9G312400.1 No alias regulatory protein *(SUO) of miRNA biogenesis pathway 0.03 Orthogroups_2024-Update
Seita.9G312600.1 No alias regulatory protein *(SUO) of miRNA biogenesis pathway 0.03 Orthogroups_2024-Update
Sopen06g027640 No alias TFIIS helical bundle-like domain 0.03 Orthogroups_2024-Update
evm.model.tig00001215.1 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0004402 histone acetyltransferase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006473 protein acetylation IEP Predicted GO
BP GO:0006475 internal protein amino acid acetylation IEP Predicted GO
MF GO:0008080 N-acetyltransferase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0016407 acetyltransferase activity IEP Predicted GO
MF GO:0016410 N-acyltransferase activity IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016573 histone acetylation IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
BP GO:0018393 internal peptidyl-lysine acetylation IEP Predicted GO
BP GO:0018394 peptidyl-lysine acetylation IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0034212 peptide N-acetyltransferase activity IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0043543 protein acylation IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR017923 TFIIS_N 395 444
No external refs found!