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  5. Sobic.001G296700.1

Sobic.001G296700.1


Description : histone *(H2A)


Gene families : OG_42_0000138 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000138_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G296700.1
Cluster HCAA Clusters: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
Glyma.01G022100 No alias histone H2A 10 0.03 Orthogroups_2024-Update
Mp2g00760.1 No alias histone (H2A) 0.02 Orthogroups_2024-Update
Seita.3G347600.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Sopen12g001250 No alias Core histone H2A/H2B/H3/H4 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Predicted GO
MF GO:0008417 fucosyltransferase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
BP GO:0018193 peptidyl-amino acid modification IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Predicted GO
BP GO:0042546 cell wall biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0071554 cell wall organization or biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 92 126
IPR007125 Histone_H2A/H2B/H3 12 89
No external refs found!