Sobic.001G297200.1

Description : HD-ZIP I/II-type transcription factor

Gene families : OG_42_0000184 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.001G297200.1
Cluster	HCAA Clusters: Cluster_176

Target	Alias	Description	ECC score	Gene Family Method
At4g16780	No alias	Homeobox-leucine zipper protein HAT4...	0.04	Orthogroups_2024-Update
At4g37790	No alias	Homeobox-leucine zipper protein HAT22...	0.03	Orthogroups_2024-Update
Brara.A00117.1	No alias	HD-ZIP I/II-type transcription factor	0.02	Orthogroups_2024-Update
Brara.C04552.1	No alias	HD-ZIP I/II-type transcription factor	0.03	Orthogroups_2024-Update
Brara.D01358.1	No alias	HD-ZIP I/II-type transcription factor	0.02	Orthogroups_2024-Update
Brara.G03012.1	No alias	HD-ZIP I/II-type transcription factor	0.03	Orthogroups_2024-Update
Brara.H01735.1	No alias	HD-ZIP I/II-type transcription factor	0.04	Orthogroups_2024-Update
Glyma.09G109700	No alias	homeobox from Arabidopsis thaliana	0.05	Orthogroups_2024-Update
LOC_Os03g12860	No alias	homeobox associated leucine zipper, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os10g41230	No alias	homeobox associated leucine zipper, putative, expressed	0.04	Orthogroups_2024-Update
MA_10434389g0010	No alias	(at5g06710 : 187.0) Homeobox-leucine zipper protein.;...	0.05	Orthogroups_2024-Update
MA_57689g0010	No alias	(at5g06710 : 222.0) Homeobox-leucine zipper protein.;...	0.04	Orthogroups_2024-Update
PSME_00018809-RA	No alias	(at5g06710 : 140.0) Homeobox-leucine zipper protein.;...	0.02	Orthogroups_2024-Update
PSME_00028375-RA	No alias	(at5g06710 : 210.0) Homeobox-leucine zipper protein.;...	0.04	Orthogroups_2024-Update
PSME_00039873-RA	No alias	(at5g06710 : 208.0) Homeobox-leucine zipper protein.;...	0.03	Orthogroups_2024-Update
Potri.002G113400	No alias	Homeobox-leucine zipper protein family	0.04	Orthogroups_2024-Update
Potri.007G008200	No alias	Homeobox-leucine zipper protein family	0.03	Orthogroups_2024-Update
Potri.010G112600	No alias	homeobox-leucine zipper protein 17	0.02	Orthogroups_2024-Update
Pp1s41_32V6	No alias	homeobox-leucine zipper protein	0.02	Orthogroups_2024-Update
Seita.2G224000.1	No alias	HD-ZIP I/II-type transcription factor	0.05	Orthogroups_2024-Update
Seita.7G187800.1	No alias	HD-ZIP I/II-type transcription factor	0.04	Orthogroups_2024-Update
Seita.9G321500.1	No alias	HD-ZIP I/II-type transcription factor	0.06	Orthogroups_2024-Update
Sobic.006G169200.1	No alias	HD-ZIP I/II-type transcription factor	0.05	Orthogroups_2024-Update
Solyc01g073910	No alias	homeobox leucine zipper protein (AHRD V3.3 *** AT5G06710.1)	0.03	Orthogroups_2024-Update
Solyc01g090460	No alias	HD-ZIP	0.04	Orthogroups_2024-Update
Solyc05g008050	No alias	Homeobox associated leucine zipper protein (AHRD V3.3...	0.04	Orthogroups_2024-Update
Sopen01g033480	No alias	Homeobox associated leucine zipper	0.03	Orthogroups_2024-Update
Sopen06g020980	No alias	HD-ZIP protein N terminus	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	16Dec
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	16Dec
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	16Dec
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Predicted GO
MF	GO:0004061	arylformamidase activity	IEP	Predicted GO
BP	GO:0006568	tryptophan metabolic process	IEP	Predicted GO
BP	GO:0006569	tryptophan catabolic process	IEP	Predicted GO
BP	GO:0006576	cellular biogenic amine metabolic process	IEP	Predicted GO
BP	GO:0006586	indolalkylamine metabolic process	IEP	Predicted GO
BP	GO:0009063	cellular amino acid catabolic process	IEP	Predicted GO
BP	GO:0009072	aromatic amino acid family metabolic process	IEP	Predicted GO
BP	GO:0009074	aromatic amino acid family catabolic process	IEP	Predicted GO
BP	GO:0009308	amine metabolic process	IEP	Predicted GO
BP	GO:0009310	amine catabolic process	IEP	Predicted GO
BP	GO:0016054	organic acid catabolic process	IEP	Predicted GO
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Predicted GO
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	Predicted GO
BP	GO:0019441	tryptophan catabolic process to kynurenine	IEP	Predicted GO
BP	GO:0042180	cellular ketone metabolic process	IEP	Predicted GO
BP	GO:0042402	cellular biogenic amine catabolic process	IEP	Predicted GO
BP	GO:0042430	indole-containing compound metabolic process	IEP	Predicted GO
BP	GO:0042436	indole-containing compound catabolic process	IEP	Predicted GO
BP	GO:0042537	benzene-containing compound metabolic process	IEP	Predicted GO
BP	GO:0044106	cellular amine metabolic process	IEP	Predicted GO
BP	GO:0044282	small molecule catabolic process	IEP	Predicted GO
BP	GO:0046218	indolalkylamine catabolic process	IEP	Predicted GO
BP	GO:0046395	carboxylic acid catabolic process	IEP	Predicted GO
BP	GO:0070189	kynurenine metabolic process	IEP	Predicted GO
MF	GO:0140110	transcription regulator activity	IEP	Predicted GO
BP	GO:1901565	organonitrogen compound catabolic process	IEP	Predicted GO
BP	GO:1901605	alpha-amino acid metabolic process	IEP	Predicted GO
BP	GO:1901606	alpha-amino acid catabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR006712	HD-ZIP_N	18	159
IPR003106	Leu_zip_homeo	250	284
IPR001356	Homeobox_dom	194	248

External Links

No external refs found!

Sobic.001G297200.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation