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  5. Sobic.001G299700.1

Sobic.001G299700.1


Description : scaffold component *(NOT1) of mRNA deadenylation CCR4-NOT complex


Gene families : OG_42_0002100 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002100_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G299700.1
Cluster HCAA Clusters: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
At1g02080 No alias Transcription regulator [Source:UniProtKB/TrEMBL;Acc:F4HVV6] 0.04 Orthogroups_2024-Update
Bradi3g33190 No alias transcription regulators 0.04 Orthogroups_2024-Update
HORVU4Hr1G088210.35 No alias scaffold component *(NOT1) of mRNA deadenylation CCR4-NOT complex 0.03 Orthogroups_2024-Update
MA_42843g0010 No alias (at1g02080 : 1165.0) transcription regulators; FUNCTIONS... 0.05 Orthogroups_2024-Update
Mp3g11860.1 No alias component NOT1 of mRNA deadenylation CCR4-NOT complex 0.03 Orthogroups_2024-Update
Pp1s41_25V6 No alias T7I23.15; transcriptional regulator-related [Arabidopsis... 0.06 Orthogroups_2024-Update
Seita.9G325500.1 No alias scaffold component *(NOT1) of mRNA deadenylation CCR4-NOT complex 0.09 Orthogroups_2024-Update
evm.model.contig_489.5 No alias (at1g02080 : 340.0) transcription regulators; FUNCTIONS... 0.02 Orthogroups_2024-Update
evm.model.tig00000767.19 No alias (at1g02080 : 377.0) transcription regulators; FUNCTIONS... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
CC GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain IEP Predicted GO
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004402 histone acetyltransferase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006473 protein acetylation IEP Predicted GO
BP GO:0006475 internal protein amino acid acetylation IEP Predicted GO
MF GO:0008080 N-acetyltransferase activity IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Predicted GO
MF GO:0015399 primary active transmembrane transporter activity IEP Predicted GO
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Predicted GO
MF GO:0016407 acetyltransferase activity IEP Predicted GO
MF GO:0016410 N-acyltransferase activity IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016573 histone acetylation IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0018193 peptidyl-amino acid modification IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
BP GO:0018393 internal peptidyl-lysine acetylation IEP Predicted GO
BP GO:0018394 peptidyl-lysine acetylation IEP Predicted GO
MF GO:0019829 cation-transporting ATPase activity IEP Predicted GO
MF GO:0022804 active transmembrane transporter activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
MF GO:0022853 active ion transmembrane transporter activity IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Predicted GO
CC GO:0033180 proton-transporting V-type ATPase, V1 domain IEP Predicted GO
MF GO:0034212 peptide N-acetyltransferase activity IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0036442 proton-exporting ATPase activity IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Predicted GO
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Predicted GO
BP GO:0043543 protein acylation IEP Predicted GO
CC GO:0044437 vacuolar part IEP Predicted GO
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Predicted GO
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP Predicted GO
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR032191 CNOT1_CAF1_bind 977 1195
IPR024557 CCR4-Not_Not1su_DUF3819 1327 1466
IPR032194 CNOT1_HEAT 471 617
IPR032193 CNOT1_TTP_bind 654 812
IPR007196 CCR4-Not_Not1_C 2032 2402
No external refs found!