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  5. Sobic.001G299900.1

Sobic.001G299900.1


Description : Unknown function


Gene families : OG_42_0002207 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002207_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G299900.1
Cluster HCAA Clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
137689 No alias photosystem II reaction center protein C 0.04 Orthogroups_2024-Update
Bradi1g70724 No alias photosystem II reaction center protein C 0.11 Orthogroups_2024-Update
Bradi1g78082 No alias photosystem II reaction center protein C 0.11 Orthogroups_2024-Update
HORVU2Hr1G062030.1 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU2Hr1G121590.1 No alias Unknown function 0.04 Orthogroups_2024-Update
LOC_Os02g24632 No alias photosystem II 44 kDa reaction center protein, putative,... 0.02 Orthogroups_2024-Update
PSME_00001174-RA No alias (p41643|psbc_pinth : 422.0) Photosystem II 44 kDa... 0.05 Orthogroups_2024-Update
PSME_00003195-RA No alias (p41643|psbc_pinth : 452.0) Photosystem II 44 kDa... 0.05 Orthogroups_2024-Update
PSME_00038449-RA No alias (p41643|psbc_pinth : 132.0) Photosystem II 44 kDa... 0.05 Orthogroups_2024-Update
Seita.4G174200.1 No alias Unknown function 0.09 Orthogroups_2024-Update
Seita.J018300.1 No alias Unknown function 0.09 Orthogroups_2024-Update
Solyc10g017940 No alias Photosystem II CP43 reaction center protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc10g047410 No alias Photosystem II CP43 reaction center protein (AHRD V3.3... 0.06 Orthogroups_2024-Update
Solyc10g061830 No alias LOW QUALITY:Photosystem II CP43 reaction center protein... 0.02 Orthogroups_2024-Update
Solyc12g027550 No alias LOW QUALITY:Photosystem II CP43 reaction center protein... 0.03 Orthogroups_2024-Update
Solyc12g038080 No alias LOW QUALITY:Photosystem II CP43 reaction center protein... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0009521 photosystem IEA 16Dec
BP GO:0009767 photosynthetic electron transport chain IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
MF GO:0016168 chlorophyll binding IEA 16Dec
BP GO:0019684 photosynthesis, light reaction IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0004089 carbonate dehydratase activity IEP Predicted GO
MF GO:0004129 cytochrome-c oxidase activity IEP Predicted GO
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
BP GO:0009060 aerobic respiration IEP Predicted GO
CC GO:0009539 photosystem II reaction center IEP Predicted GO
CC GO:0009579 thylakoid IEP Predicted GO
BP GO:0010109 regulation of photosynthesis IEP Predicted GO
MF GO:0015002 heme-copper terminal oxidase activity IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
BP GO:0015980 energy derivation by oxidation of organic compounds IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP Predicted GO
MF GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016836 hydro-lyase activity IEP Predicted GO
BP GO:0042548 regulation of photosynthesis, light reaction IEP Predicted GO
BP GO:0042549 photosystem II stabilization IEP Predicted GO
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Predicted GO
BP GO:0045333 cellular respiration IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000932 PS_antenna-like 45 76
IPR000932 PS_antenna-like 289 368
IPR000932 PS_antenna-like 79 283
No external refs found!